dence

dence's Stars

• Mintplex-Labs/anything-llm

  The all-in-one Desktop & Docker AI application with built-in RAG, AI agents, and more.

  Language:JavaScript22.5k1751.5k2.3k

• unslothai/unsloth

  Finetune Llama 3.1, Mistral, Phi & Gemma LLMs 2-5x faster with 80% less memory

  Language:Python15.6k1028021k

• cxli233/FriendsDontLetFriends

  Friends don't let friends make certain types of data visualization - What are they and why are they bad.

  Language:R6.3k1097226

• snakemake/snakemake

  This is the development home of the workflow management system Snakemake. For general information, see

  Language:HTML2.2k191.7k543

• quinlan-lab/applied-computational-genomics

  Applied Computational Genomics Course at UU: Spring 2020

  Language:HTML936898204

• cmdcolin/awesome-genome-visualization

  A list of interesting genome browser or genome-browser-like implementations

  Language:TypeScript826289107

• tanghaibao/goatools

  Python library to handle Gene Ontology (GO) terms

  Language:Python76423210211

• RILAB/statements

  Successful Job Applications and Grants

  671661125

• zqfang/GSEApy

  Gene Set Enrichment Analysis in Python

  Language:Python54411199113

• broadinstitute/pilon

  Pilon is an automated genome assembly improvement and variant detection tool

  Language:Scala3403017060

• nextgenusfs/funannotate

  Eukaryotic Genome Annotation Pipeline

  Language:Python317161k83

• sgkit-dev/sgkit

  Scalable genetics toolkit

  Language:Python2271669132

• cmap/cmapPy

  Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

  Language:Python124275574

• wurmlab/flo

  Same species annotation lift over pipeline.

  Language:Ruby95164128

• JimWhiting91/genotype_plot

  A set of functions to visualise genotypes based on a VCF

  Language:R8341417

• leonardojo/ggPlantmap

  Language:R79525

• SBRG/bigg_models

  The BiGG Models website server

  Language:Python772038318

• epigenelabs/pyComBat

  pyComBat is a Python 3 implementation of ComBat, one of the most widely used tool for correcting technical biases, called batch effects, in microarray expression data.

  Language:Python7461722

• favilaco/deconv_benchmark

  Language:R555618

• aquaskyline/LRSIM

  10x Genomics Reads Simulator

  Language:C4563615

• schatzlab/appliedgenomics2023

  Materials for EN.601.449/649 Computational Genomics: Applied Comparative Genomics

  Language:HTML27805

• slt666666/NLRtracker

  NLR annotation tool

  Language:R223174

• idekerlab/KEGGscape

  A Cytoscape app for importing KGML(KEGG pathway XML)

  Language:Java21132410

• Arcadia-Science/nextflow-template-repository

  GitHub template repository for creating new barebones Nextflow pipelines, using the Arcadia-Science/nextflow-template cookiecutter template

  13311

• mwang87/GNPS_MASST

  Language:Python123203

• ccf-tfehlmann/ibdplexus

  This package helps wrangle the clinical data in IBD Plexus. IBD Plexus is a data exchange platform designed to accelerate research toward finding cures for Inflammatory Bowel Disease (IBD). To learn more please see https://www.crohnscolitisfoundation.org/research/current-research-initiatives/ibd-plexus.

  Language:HTML113

• yunhaowang/IsoSeqSim

  Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies

  Language:Python11204

• biocorecrg/transcriptome_assembly

  Biocore's de novo transcriptome assembly workflow based on Nextflow

  Language:Nextflow3322

• Rowena-h/MiscGenomicsTools

  🛠️

  Language:Shell2101

• ctSkennerton/biopython

  Official git repository for Biopython (converted from CVS)

  Language:Python120