eatkinson

eatkinson's Stars

• brentp/somalier

  fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

  Language:Nim272913038

• Illumina/Nirvana

  The nimble & robust variant annotator

  Language:C#1743512344

• getian107/PRScs

  Polygenic prediction via continuous shrinkage priors

  Language:Python158118859

• MRCIEU/PHESANT

  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank

  Language:R139134468

• EGA-archive/ega-download-client

  A Python-based EGA download client

  Language:Python95915653

• odelaneau/shapeit4

  Segmented HAPlotype Estimation and Imputation Tool

  Language:C++9068418

• freeseek/mocha

  MOsaic CHromosomal Alterations (MoChA) caller

  Language:C8274723

• odelaneau/shapeit5

  Segmented HAPlotype Estimation and Imputation Tool

  Language:C++73410012

• ramachandran-lab/pong

  Fast analysis and visualization of latent clusters in population genetic data

  Language:Python6873212

• AI-sandbox/neural-admixture

  Rapid population clustering with autoencoders

  Language:Python675199

• precimed/mixer

  Causal Mixture Model for GWAS summary statistics

  Language:C67229618

• totajuliusd/topr

  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple phenotypes can be viewed simultaneously, over the entire genome (Manhattan plot) or in the more detailed regional view.

  Language:HTML5333114

• atgu/hgdp_tgp

  Language:Jupyter Notebook36985

• comorment/containers

  CoMorMent-Containers

  Language:R26717210

• alisi1989/RFMIX2-Pipeline-to-plot

  Here we present a method to plot the outputs of RFMIX version 2

  Language:q21214

• CAST-genomics/haptools

  Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis

  Language:Python204544

• DudbridgeLab/avengeme

  Statistical properties of polygenic risk scores

  Language:R19715

• atgu/GWASpy

  GWAS QC, PCA, haplotype phasing, genotype imputation

  Language:Python17515

• AI-sandbox/archetypal-analysis

  Language:Python13131

• mkveerapen/2021_IBG_Hail

  Language:Jupyter Notebook13203

• yukt/MetaMinimac2

  Language:C++11194

• collaborativebioinformatics/SpikeVarTykeVar

  Language:Python8905

• nievergeltlab/global_ancestry

  Global ancestry pipeline

  Language:Shell6204

• broadinstitute/gnomad_local_ancestry

  Hail batch pipeline and scripts for local ancestry inference

  Language:Python4111230

• MataLabCCF/GWASwithLA

  Language:Python410

• menglin44/APRICOT

  Language:R420

• MataLabCCF/XWAS

  Cleaning process based on the the process performed in https://doi.org/10.1002/ana.26051

  Language:Python2101

• atgu/NeuroGAP

  Primary repository for efforts and analyses of the Neuropsychiatric Genetics in African Populations

  Language:Python1601

• jverlouw/ArrayComparisonData

  110

• na89/DNAdiscover

  Predictor for technical bias in DNA variants in NGS data

  Language:R130