elsherbini

elsherbini's Stars

• chriskiehl/Gooey

  Turn (almost) any Python command line program into a full GUI application with one line

  Language:Python20.9k2846041k

• binwiederhier/ntfy

  Send push notifications to your phone or desktop using PUT/POST

  Language:Go20k95905794

• caronc/apprise

  Apprise - Push Notifications that work with just about every platform!

  Language:Python12.6k72588442

• tonaljs/tonal

  A music theory library for Javascript

  Language:TypeScript3.9k60208226

• snakemake/snakemake

  This is the development home of the workflow management system Snakemake. For general information, see

  Language:HTML2.4k201.8k565

• debiki/talkyard

  A community discussion platform: Brings together the main features from StackOverflow, Slack, Discourse, Reddit, and Disqus blog comments.

  Language:TypeScript1.7k300128

• mhkeller/layercake

  graphics framework for sveltejs

  Language:Svelte1.5k1312532

• Rich-Harris/pancake

  Experimental charting library for Svelte

  Language:JavaScript1.3k332564

• nf-core/rnaseq

  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

  Language:Nextflow984159688722

• merenlab/anvio

  An analysis and visualization platform for 'omics data

  Language:Python449291.7k146

• debiki/talkyard-prod-one

  Talkyard production installation on one single server.

  Language:Shell26213043

• wwood/kingfisher-download

  Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

  Language:Python25483438

• nf-core/mag

  Assembly and binning of metagenomes

  Language:Nextflow228160316118

• nf-core/ampliseq

  Amplicon sequencing analysis workflow using DADA2 and QIIME2

  Language:Nextflow191152362126

• nf-core/fetchngs

  Pipeline to fetch metadata and raw FastQ files from public databases

  Language:Nextflow1641008675

• dnbaker/dashing

  Fast and accurate genomic distances using HyperLogLog

  Language:C++160116412

• nf-core/taxprofiler

  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

  Language:Nextflow13615420840

• kblin/ncbi-acc-download

  Download files from NCBI Entrez by accession

  Language:Python1196258

• david-barnett/microViz

  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.

  Language:R113510511

• charlieroberts/gibber.audio.lib

  music and audio library for Gibber

  Language:JavaScript8792210

• knights-lab/BURST

  An ultrafast optimal aligner for mapping large NGS data to large genome databases.

  Language:C575359

• wwood/galah

  More scalable dereplication for metagenome assembled genomes

  Language:Rust4952612

• philarevalo/PopCOGenT

  Microbial Populations as Clusters Of Gene Transfer

  Language:C++4483512

• algo-cancer/CAMMiQ

  Metagenomics microbial abundance quantification

  Language:C++27260

• nf-core/phageannotator

  Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.

  Language:Nextflow12154708

• gregbritten/BayesianEcosystems_IAP

  Notes and code for Bayesian ecosystem modeling IAP course

  Language:Jupyter Notebook10301

• simonrharris/pyjar

  A python implementation of the joint ancestral state reconstruction algorithm of Pupko et al

  Language:Python9212

• 1danjordan/hugo-envisioned

  Content centric Hugo blogging theme styled with Tufte-css

  Language:CSS6301

• ratatstats/manusdown

  An updated R Markdown thesis template using the bookdown package

  Language:TeX5201

• patrickwest/NCBI_contamination_fix

  Language:Python3003