enasequence/sequencetools

Issues

• Should FastaFileValidationCheck be FlatfileFileValidationCheck in FlatfileFileValidationCheckTest?

  #173 opened 5 months ago by mahesh-panchal
  0

• Debug output in QualifierCheck.java

  #155 opened 9 months ago by thallinger
  0

• Release resource during parsing

  #51 opened 2 years ago by nbuso
  1

• typo

  #55 opened 2 years ago by epaule
  1

• Update build instructions to require Gradle version below 7

  #134 opened 2 years ago by wna-se
  2

• Date validator

  #19 opened 2 years ago by sachalau
  13

• FlatFileUtils SimpleDateFormat not thread safe

  #43 opened 2 years ago by nbuso
  1

• Validation of dates in FlatFile genome annotations failing with system locale set to sv_SE

  #132 opened 2 years ago by wna-se
  2

• Dependency "uk.ac.ebi.ena:webin-era-service-sdk:3.4.1" not publicly available

  #133 opened 2 years ago by wna-se
  2

• Differences between embl-api-validator-1.1.180 and the validator included in the submission pipeline

  #24 opened 5 years ago by Juke34
  1

• Where are the relases gone?

  #56 opened 5 years ago by sklages
  1

• flat file validator: ERROR: Abutting features - but 2 different genes

  #22 opened 5 years ago by Juke34
  10

• embl-api-validator is deleting gene for single exon/CDS features

  #54 opened 6 years ago by Asutu
  1

• IllegalArgumentException: Comparison method violates its general contract!

  #53 opened 6 years ago by Asutu
  4

• CDS entries dealing with AH lines

  #48 opened 6 years ago by nbuso
  0

• CDS entries DataClass CON shouldn't require CO lines

  #47 opened 6 years ago by nbuso
  1

• Non-Coding entries AC line requred once

  #45 opened 6 years ago by nbuso
  0

• 1.SG.19_16S rRNA

  #41 opened 6 years ago by Venieraki
  0

• 1.SG.13_16S rRNA

  #40 opened 6 years ago by Venieraki
  0

• 1.SG.8_16S rRNA

  #39 opened 6 years ago by Venieraki
  0

• 1.SG.6_16S rRNA

  #38 opened 6 years ago by Venieraki
  0

• 1.SG.2_16S rRNA

  #37 opened 6 years ago by Venieraki
  0

• Genbank parser

  #34 opened 6 years ago by jjkoehorst
  1

• Connection timeout with embl-api-validator - option to skip or specify proxy?

  #31 opened 7 years ago by kbseah
  3

• Entry features ignored / skipped

  #30 opened 7 years ago by jjkoehorst
  0

• Provide entry bytes offset

  #28 opened 7 years ago by nbuso
  0

• Parsing of non-coding flat files

  #23 opened 7 years ago by nbuso
  4

• Invalid file triggers NullPointerException

  #9 opened 7 years ago by satta
  6

• Values missing in error messages (template unfilled)?

  #12 opened 8 years ago by peterjc
  3

• Problem with the RL line

  #18 opened 7 years ago by Juke34
  2

• Malformed EC numbers are not caught

  #21 opened 7 years ago by bastian-wur
  3

• Validator does not catch wrong frame in transl_except

  #20 opened 7 years ago by bastian-wur
  3

• Problem with RA and RG lines

  #17 opened 8 years ago by Juke34
  1

• Problem when checking the Primary Accession between ID and AC lines.

  #16 opened 8 years ago by Juke34
  2

• Scientific_name is not submittable (MasterEntrySourceCheck_2)

  #15 opened 8 years ago by peterjc
  5

• Zero return code when validation fails

  #14 opened 8 years ago by peterjc
  6

• Duplicate INFO messages about transl_table

  #13 opened 8 years ago by peterjc
  0

• Line terminators in gradlew

  #10 opened 8 years ago by satta
  2

• Please tag a released version

  #3 opened 8 years ago by satta
  1

• Build instructions missing

  #6 opened 8 years ago by bastian-wur
  6

• Typo in -l log level help, Quite --> Quiet

  #8 opened 8 years ago by peterjc
  2

• Please document validator usage

  #7 opened 8 years ago by satta
  9

• Validator missing command line --version or -v switch

  #2 opened 8 years ago by peterjc
  4

• Allow standalone building

  #4 opened 8 years ago by satta
  5

• https://www.ebi.ac.uk/ena/software/flat-file-validator missing GitHub link

  #1 opened 8 years ago by peterjc
  2