ewels
Product manager for open source @seqeralabs. Working with @nextflow-io, @nf-core, @MultiQC and more. Author of @MultiQC and co-creator of @nf-core.
@seqeralabsStockholm, Sweden
Pinned Repositories
AWS-iGenomes
Documentation and description of AWS iGenomes S3 resource.
clusterflow
A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
CPT-Bootstrap-Carousel
WordPress plugin which generates a custom post type for choosing images and content. Outputs Bootstrap Image Carousel (slider) HTML from a shortcode.
nf-core-rnaseq
See the main fork of this repository here >>>
rich-click
Format click help output nicely with rich.
rich-codex
Create rich code images for your docs.
sra-explorer
Web application to explore the Sequence Read Archive.
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
nextflow
A DSL for data-driven computational pipelines
tools
Python package with helper tools for the nf-core community.
ewels's Repositories
ewels/ngi_visualizations
Development fork. Head fork here >>>
ewels/tldr-bash
Simplified and community-driven man pages http://tldr-pages.github.io/
ewels/sequences
A lightweight and quick DNA sequence manipulation tool.
ewels/flask-subcommand-issue
Minimal test example for flask / click subcommand problem
ewels/nf-core-cookiecutter
DEPRECIATED! Please use nf-core/tools instead
ewels/NGI-NextflowDocs
Common documentation for National Genomics Infrastructure pipelines built with Nextflow
ewels/10XQC
A system for monitoring the quality of 10X single cell data
ewels/awesome-10x-genomics
List of tools and resources related to the 10x genomics GEMCode/Chromium system
ewels/BamQC
Mapped QC analysis program
ewels/BeerClub
A web application to keep track of the beer accounts for registered members.
ewels/colormath-feedstock
A conda-smithy repository for colormath.
ewels/hack17
Nextflow hackathon 2017 projects
ewels/irma-provision
Ansible playbooks for provisioning NGI pipeline and related sw
ewels/jobstats-explorer
Dump job metadata from UPPMAX, then explore it in a web front-end.
ewels/leeHom
Bayesian reconstruction of ancient DNA fragments
ewels/lz-string-python
lz-string for python 2/3
ewels/nf-core-deepvariant
Main fork of this pipeline >>>
ewels/nf-core-exoseq
See the main fork of this repository here >>>
ewels/nf-core-logos
See the main fork of this repository here >>>
ewels/nf-core-neutronstar
See the main fork of this repository here >>>
ewels/nf-core-rnafusion
See the main fork of this repository here >>>
ewels/nf-core.github.io
Documentation website for the nf-core community
ewels/ngipubs
Web tool to find and annotate NGI publications
ewels/open-data-registry
A registry of publicly available datasets on AWS
ewels/OrderPortal
A portal for orders (= requests, project applications) for one or more facilities.
ewels/python-colormath
A python module that abstracts common color math operations. For example, converting from CIE L*a*b to XYZ, or from RGB to CMYK
ewels/SeqMonk
SeqMonk NGS visualisation and analysis tool
ewels/spectra-feedstock
A conda-smithy repository for spectra.
ewels/TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
ewels/vipr
Assembly and intrahost / low-frequency variant calling for viral samples