gagneurlab/OUTRIDER
OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
RMIT
Issues
- 1
PROTRIDER questions
#59 opened by m-pauper - 1
- 5
The difference in sequencing volume and OUTRIDER
#57 opened by zyyy97 - 5
findEncodingDim issues
#39 opened by lemdcock - 1
the input file
#56 opened by zyyy97 - 2
- 2
findEncodingDim running issues
#36 opened by runjin326 - 1
- 2
change labels for gene statistics plot
#33 opened by c-mertes - 2
- 1
- 4
- 14
- 1
Ubuntu Groovy doesn't have libmysqld-dev
#31 opened by drtconway - 5
findEncodingDims Out-of-Memory Issues
#40 opened by lemdcock - 0
dummy issue (please ignore)
#43 opened by nickhsmith - 2
OURIDER do not run serially
#41 opened by xuwenjian85 - 0
Predefined covariates
#38 opened by gk1610 - 2
- 0
sample swaps: OutriderDataSet(countData=cts, colData=anno) makes undocumented(?) assumption that "cts" columns have same order as "anno" rows, leading to results with incorrect sample labels when this is not met.
#32 opened by bw2 - 1
make S3 methods out of the plotting functions so we can use FRASER in parallel
#27 opened by c-mertes - 1
make normalized counts independent of subsetting
#29 opened by c-mertes - 1
findEncodingDim always uses all avaialble cores
#26 opened by emariella - 2
how to export expression level data
#24 opened by xuwenjian85 - 0
improve z-scores
#23 opened by Hoeze - 11
Missing possible outliers due to high pvalues
#20 opened by ccasar - 5
Always hangs during autoencoding
#18 opened by furbelows - 3
- 2
- 9
Fit didn't converge with warning: NEW_X
#7 opened by naumenko-sa - 1
- 1
- 4
error creating OutriderDataSet
#3 opened by shukwong - 3