Issues
- 3
- 2
Test against 22.01
#602 opened by mvdbeek - 1
Unused tool parameters
#601 opened by bernt-matthias - 6
- 7
Release testing 21.05
#592 opened by mvdbeek - 4
Fix gifs in Get flanks tool description
#597 opened by millen2223 - 2
Megablast /conda issue
#594 opened by nagoue - 3
Testing CI
#589 opened by bernt-matthias - 5
Support wider columnar files
#505 opened by hexylena - 3
- 4
Run tool tests against 20.09
#576 opened by mvdbeek - 1
peakcalling_macs needs python 2 dependency
#540 opened by mvdbeek - 5
- 1
MarkDuplicatesWithMateCigar aborted with error
#520 opened by prishly - 2
- 1
- 2
Filter FASTQ length filtering issue
#528 opened by stalekar - 1
Fasta filer by length fails when max_length !=0
#536 opened by Takadonet - 1
Error while running gffread.
#556 opened by ambarishK - 1
Annovar from devteam is not Python3 compatible
#539 opened by jennaj - 1
Histogram tool using python2
#554 opened by sokffa - 1
change_case tool omits header?
#557 opened by AjitPS - 2
- 2
Move galaxy_sequence_utilities to /legacy
#522 opened by jdavcs - 7
Latest freebayes cannot use list collection
#429 opened by Takadonet - 1
Split gffread tool out from cufflinks and update
#530 opened by lparsons - 9
Cuffdiff 2.2.1.5 SQLite option results in job failures
#509 opened by jennaj - 2
- 8
Annotate with DGI 0.1 - silent tool error
#504 opened by jennaj - 4
Sicer Version 0.0.1 fails for not finding one of the output files during execution
#498 opened by jennaj - 7
FastQC: fonts problem
#491 opened by bernt-matthias - 1
VCFFilter fails with segmentation fault when negative values included in filter
#438 opened by jennaj - 3
- 20
cufflinks dependency problem
#452 opened by tiagoantao - 2
- 1
Fastq interlacer 1.2.0 and de-interlacer 1.1.1 tools fail with compressed inputs
#487 opened by jennaj - 0
Enhancement: Upgrade Fastq interlacer 1.2.0 and de-interlacer 1.1.1 to work with Illumina 1.8+ identifiers
#488 opened by jennaj - 4
- 3
gi2taxonomy seems outdated
#483 opened by bernt-matthias - 0
Annovar v0.2 is problematic and needs a correction.
#480 opened by jennaj - 0
- 2
Unsorted BAM output for bwa mem?
#478 opened by dpryan79 - 1
- 1
Adding MiniKrakenDB and SILVA to Kraken Data manager?
#443 opened by vebaev - 1
- 4
Remove MarkDuplicatesWithMateCigar 1.126.0 from http://usegalaxy.org (and MTS?)
#462 opened by jennaj - 1
Tool directory variable in Python
#457 opened by CicoZhang - 0
Bamtools Filter BAM triggers a combined job instead of distinct jobs with version 2
#440 opened by jennaj - 0
Enhance/normalize "Picard Normalize Fasta" default settings and better link-in custom genome formatting
#433 opened by jennaj - 0
Picard FixMateInformation does not launch individual jobs when multiple datasets are selected
#421 opened by jennaj