gmarcais/Jellyfish

Issues

• kmer missing

  #209 opened 4 months ago by Dkaaaaa
  0

• kitsune and jellyfish error "Bloom filter file is truncated"

  #199 opened a year ago by rmormando
  2

• Has anyone actually compiled jellyfish with bindings?

  #208 opened 5 months ago by lskatz
  8

• Can the query subroutine support a large number of k-mer inputs simultaneously?

  #207 opened 7 months ago by caixu0518
  0

• Count both strands' kmer sets

  #206 opened 7 months ago by DayTimeMouse
  0

• How to get the version of jellyfish

  #194 opened 9 months ago by bhishanpdl
  1

• Difference between reading concatenated PE reads and merging paired end .jf outputs independently

  #204 opened 10 months ago by JWrighty97
  0

• out of memory?

  #198 opened a year ago by biofcallejas
  1

• kff to jff

  #201 opened a year ago by JosephLalli
  0

• mer_dna.hpp: line 84

  #200 opened a year ago by Pentagon03
  1

• Package to read in binary .jf output file in python?

  #195 opened a year ago by hangsuUNC
  2

• strange error with query

  #188 opened 3 years ago by mbiokyle29
  3

• Gzipped fastq files

  #186 opened 3 years ago by keenhl
  1

• Dramatic output difference between version 2.2.10 and 2.3.0

  #197 opened 2 years ago by sNO0By
  0

• Where can I find the 2.0 version of Jellyfish?

  #196 opened 2 years ago by jingydz
  0

• Why is the installed Python library different depending on build method? Re: bioconda

  #161 opened 5 years ago by cerebis
  4

• Compile error on 2.3.0

  #159 opened 5 years ago by sjaenick
  2

• How does Jellyfish behave in presence of ambiguous nucleotides (such as N)?

  #182 opened 3 years ago by ashenflower
  3

• Is there any way to count kmer and get histo on multi-hosts?

  #193 opened 2 years ago by zokie
  0

• Performance regression in Jellyfish 2.3.0

  #192 opened 2 years ago by kissake
  0

• tests/swig_perl flaky - possibly hardware dependent

  #191 opened 2 years ago by emollier
  0

• build failure with gcc-12

  #190 opened 3 years ago by emollier
  2

• Implementing to count ambiguous bases

  #185 opened 3 years ago by tu4n-p
  0

• standalone C++ API for lock-free concurrent hashmap?

  #184 opened 3 years ago by colin-heberling
  2

• Potential error in documentation

  #181 opened 3 years ago by giang-nghg
  1

• Add Jellyfish to Nix package repository

  #183 opened 3 years ago by giang-nghg
  0

• Problem for PacBio Hifi reads in "jellyfish count" command

  #180 opened 3 years ago by sakshar
  0

• Genome masking

  #179 opened 3 years ago by xbarvazx
  0

• How do I choose the size parameter

  #177 opened 3 years ago by Iven-gif
  0

• Problem encountered with configure

  #176 opened 3 years ago by Jianz9293
  0

• Jellyfish count runs very slowly on Apple M1 processor

  #175 opened 4 years ago by SachinDavis
  1

• Null characters in text output and missing k-mers

  #174 opened 4 years ago by fluhus
  0

• Failed to open input file

  #173 opened 4 years ago by Otis-chan
  0

• How can I get index in reads for k-mers?

  #168 opened 4 years ago by zhang570221322
  0

• How to replicate k-mer file from Jellyfish 1

  #167 opened 4 years ago by mladen5000
  0

• Release tarball is missing BSD and GPL license files

  #153 opened 5 years ago by ebiggers
  2

• Jellyfish File Specifications

  #166 opened 5 years ago by mhorlacher
  0

• Calculation of genome size

  #164 opened 5 years ago by bioramg
  5

• Using jellyfish within C code

  #165 opened 5 years ago by asylvz
  0

• Memory allocation error due to large hash leaves behind orphaned generator processes

  #162 opened 5 years ago by cerebis
  1

• Piping sequence into jellyfish

  #160 opened 5 years ago by gmarcais
  1

• Is it possible to change step size?

  #155 opened 5 years ago by mtnouchi
  4

• jellyfish 1.1.12 q-mer counts equal to 0 (0.000000e+00)

  #158 opened 5 years ago by Aranka-S
  2

• jellyfish dump might miss some kmers?

  #157 opened 5 years ago by YuanwenGuo
  1

• Cannot write the histo result into a file

  #156 opened 5 years ago by ZeweiSong
  1

• ./configure doesn't work on server

  #154 opened 5 years ago by Dr-Stef
  2

• Jellyfish installation in PATH and creating Jellyfish dictionary

  #152 opened 5 years ago by rahmas36
  0

• jellyfish doesn't recognize "qmerge" and "q" options

  #151 opened 5 years ago by DerangePsycho
  2

• jf file not being written

  #150 opened 5 years ago by Tj-Idowu
  1

• Build fails Jellyfish 2.3.0 with Python bindings

  #149 opened 5 years ago by Parsoa
  4