hanbinlu

hanbinlu's Stars

• tensorflow/tensorflow

  An Open Source Machine Learning Framework for Everyone

  Language:C++189k7.5k40.3k74.6k

• ray-project/ray

  Ray is an AI compute engine. Ray consists of a core distributed runtime and a set of AI Libraries for accelerating ML workloads.

  Language:Python36.1k48019.7k6.1k

• networkx/networkx

  Network Analysis in Python

  Language:Python15.5k2803.2k3.3k

• statsmodels/statsmodels

  Statsmodels: statistical modeling and econometrics in Python

  Language:Python10.5k2865.5k3.3k

• scikit-learn-contrib/imbalanced-learn

  A Python Package to Tackle the Curse of Imbalanced Datasets in Machine Learning

  Language:Python6.9k1416081.3k

• rapidsai/cuml

  cuML - RAPIDS Machine Learning Library

  Language:C++4.5k762.6k563

• microsoft/BioGPT

  Language:Python4.4k7193460

• scverse/scanpy

  Single-cell analysis in Python. Scales to >100M cells.

  Language:Python2k471.8k615

• Phlya/adjustText

  A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps.

  Language:Jupyter Notebook1.5k916090

• deeptools/pyGenomeTracks

  python module to plot beautiful and highly customizable genome browser tracks

  Language:Python79730211117

• jupyterlab-contrib/jupyterlab-vim

  Vim notebook cell bindings for JupyterLab

  Language:TypeScript716710044

• lme4/lme4

  Mixed-effects models in R using S4 classes and methods with RcppEigen

  Language:HTML64854746154

• owkin/PyDESeq2

  A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

  Language:Python6331114670

• scverse/anndata

  Annotated data.

  Language:Python61212766160

• zqfang/GSEApy

  Gene Set Enrichment Analysis in Python

  Language:Python60911217125

• pyranges/pyranges

  Performant Pythonic GenomicRanges

  Language:Python4601222248

• webermarcolivier/statannot

  add statistical annotations (pvalue significance) on an existing boxplot generated by seaborn boxplot

  Language:Jupyter Notebook39895874

• smorabit/hdWGCNA

  High dimensional weighted gene co-expression network analysis

  Language:R385434637

• broadinstitute/CellBender

  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

  Language:Python314933561

• theislab/single-cell-transformer-papers

  Language:HTML303135837

• mortazavilab/PyWGCNA

  PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

  Language:Jupyter Notebook242612760

• slowkow/harmonypy

  🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

  Language:Python21753022

• digitalcytometry/ecotyper

  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

  Language:R19739942

• kbarbary/Dierckx.jl

  Julia package for 1-d and 2-d splines

  Language:Julia15864930

• broadinstitute/depmap_omics

  What you need to process the Quarterly DepMap-Omics releases from Terra

  Language:HTML114165122

• cognoma/cognoma

  Putting machine learning in the hands of cancer biologists

  Language:Jupyter Notebook96433228

• noobCoding/Benchmarking-integration-of-differential-expression

  Language:R24213

• cognoma/cancer-data

  TCGA data acquisition and processing for Project Cognoma

  Language:Jupyter Notebook2092428

• y9c/m6A-SACseq

  🧪 Optimized protocol for m6A-SAC-seq

  Language:Python8102

• y9c/bullet-theme.zsh

  :bullettrain_side: An oh-my-zsh shell theme based on the Powerline Vim plugin

  Language:Shell100