helrick

helrick's Stars

• GokuMohandas/Made-With-ML

  Learn how to design, develop, deploy and iterate on production-grade ML applications.

  Language:Jupyter Notebook38k1.2k736k

• damianavila/RISE

  RISE: "Live" Reveal.js Jupyter/IPython Slideshow Extension

  Language:JavaScript3.7k85450416

• adrianlarion/useful-sed

  Useful sed scripts & patterns.

  3.6k465187

• stephenturner/oneliners

  Useful bash one-liners for bioinformatics.

  1.9k15510518

• samtools/htslib

  C library for high-throughput sequencing data formats

  Language:C81963723442

• seq-lang/seq

  A high-performance, Pythonic language for bioinformatics

  Language:C++7002313050

• ElsevierDev/elsapy

  A Python module for use with Elsevier's APIs: Scopus, ScienceDirect, others.

  Language:Python3791855148

• luntergroup/octopus

  Bayesian haplotype-based mutation calling

  Language:C++3061926937

• showteeth/ggcoverage

  Visualize and annotate genomic coverage with ggplot2

  Language:R24353420

• skaji/remote-pbcopy-iterm2

  remote pbcopy for iTerm2

  Language:Go2438316

• vsbuffalo/scidataflow

  Command line scientific data management tool

  Language:Rust21741810

• cortes-ciriano-lab/SComatic

  A tool for detecting somatic variants in single cell data

  Language:Python18236828

• hall-lab/svtools

  Tools for processing and analyzing structural variants.

  Language:Python1501817254

• brentp/jigv

  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"

  Language:Nim1263217

• singularityhub/singularity-hpc

  Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.

  Language:Python114715127

• MoMI-G/MoMI-G

  Modular Multi-scale Integrated Genome Graph Browser

  Language:TypeScript877206

• bcgsc/mavis

  Merging, Annotation, Validation, and Illustration of Structural variants

  Language:Python741316214

• SamStudio8/reticulatus

  A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads

  Language:Python698545

• nf-core/oncoanalyser

  A comprehensive cancer DNA/RNA analysis and reporting pipeline

  Language:Nextflow571683711

• mskilab-org/JaBbA

  MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.

  Language:R56114926

• cortes-ciriano-lab/savana

  Somatic structural variant caller for long-read data

  Language:Python536402

• refresh-bio/colord

  A versatile compressor of third generation sequencing reads.

  Language:C++494914

• fakedrtom/SVAFotate

  Language:Python392192

• goldman-gp-ebi/BOSS-RUNS

  Dynamic, adaptive sampling during nanopore sequencing

  Language:Python29687

• cortes-ciriano-lab/ReConPlot

  Language:HTML21122

• singularityhub/singularity-deploy

  Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client

  Language:Singularity166512

• Papatheodorou-Group/CATD_snakemake

  Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq datasets

  Language:R15522

• icgc-argo/wfpm

  WorkFlow Package Manager

  Language:Python912232

• alussana/phosx

  Kinase activity inference from phosphosproteomics data

  Language:Python4101

• cortes-ciriano-lab/telomere_fusions

  Code to call telomere fusions using DNA sequencing data

  Language:R4200