jianhong/ChIPpeakAnno

Issues

• makeVennDiagram

  #45 opened 4 months ago by zhangqc723
  4

• Number of Overlap Peaks

  #44 opened 6 months ago by zhangqc723
  1

• anno gene in heatmap

  #43 opened 6 months ago by li1311139481
  4

• Regarding oligoSummary()

  #36 opened 6 months ago by hukai916
  1

• opened in error

  #41 opened 9 months ago by joshua-theisen
  0

• makeVennDiagram produces undesired console output

  #35 opened a year ago by drighelli
  6

• hello，I don't know how to deal with it，can you help me figure it out. thanks

  #34 opened a year ago by Rachel12138
  8

• cvglists rtracklayer import error: Error in stop_if_wrong_length(what, ans_len) 'ranges' must have the length of the object to construct

  #30 opened 2 years ago by c2b2pss
  4

• makeVennDiagram fails with error 'Unexpected parameter length for "col"'

  #28 opened 2 years ago by joshua-theisen
  4

• `findOverlapsOfPeaks(gr1, gr2)` Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs.

  #25 opened 2 years ago by danli349
  6

• oligoSummary not populating the motif matrix output field

  #27 opened 2 years ago by jesswhitts
  2

• disjointExons removed in Bioconductor 3.17

  #21 opened 2 years ago by yeyuan98
  1

• How to understand otherExon

  #22 opened 2 years ago by lbwfff
  7

• How to set the circle size same proportion of the number of peaks when there are more than 2 sets using `makeVennDiagram`?

  #26 opened 2 years ago by danli349
  5

• Differences between bedtools overlap / findOverlaps and findOverlapsOfPeaks

  #18 opened 3 years ago by csijcs
  10

• toGRanges() can't read in file name

  #17 opened 3 years ago by hukai916
  1

• error in enrichmentPlot() when providing a partially empty GO object

  #16 opened 3 years ago by spribitzer
  1

• Error with `bindingType` in `annotatePeakInBatch`

  #13 opened 4 years ago by rbenel
  2

• Questions on the how genomicElementDistribution works

  #15 opened 3 years ago by Kyung-TaeLee
  1

• toGRanges() no longer working in response to UCSC update

  #14 opened 3 years ago by jardplard
  3

• genomicElementDistribution not found

  #11 opened 4 years ago by Hemantcnaik
  5

• invalid class "CompressedGRangesList" object

  #10 opened 4 years ago by GBeattie
  1

• Annotation for dm6 does not contain gene_name

  #8 opened 4 years ago by ashleymaeconard
  2

• save featureAlignedHeatmap output to picture file ?

  #9 opened 4 years ago by jupollet
  2

• assignChromosomeRegion

  #4 opened 4 years ago by mick42-star
  1

• Bug in annotatePeakInBatch (fix found): invalid class "DFrame" object: column names should not be NULL

  #5 opened 4 years ago by millerh1
  3

• genomicElementDistribution

  #7 opened 4 years ago by GerardoZA
  1

• Bug in makeVennDiagram.R

  #6 opened 4 years ago by adamd3
  1

• overlapofpeak issue

  #3 opened 5 years ago by GerardoZA
  2

• findOverlapsOfPeaks error: Inputs contain duplicated ranges

  #1 opened 5 years ago by AdrijaK
  1

• getAllPeakSequence() incongrous length between seq and myPeakList

  #2 opened 5 years ago by millerh1
  1