jianshu93

jianshu93's Stars

• angular/angular

  Deliver web apps with confidence 🚀

  Language:TypeScript96.6k3k28.6k25.7k

• bevyengine/bevy

  A refreshingly simple data-driven game engine built in Rust

  Language:Rust37.4k2986.1k3.7k

• google-deepmind/alphafold

  Open source code for AlphaFold 2.

  Language:Python13.1k2288702.3k

• libp2p/rust-libp2p

  The Rust Implementation of the libp2p networking stack.

  Language:Rust4.7k971.3k999

• hora-search/hora

  🚀 efficient approximate nearest neighbor search algorithm collections library written in Rust 🦀 .

  Language:Rust2.6k493073

• flann-lib/flann

  Fast Library for Approximate Nearest Neighbors

  Language:C++2.3k79365647

• rust-bio/rust-bio

  This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

  Language:Rust1.6k70202206

• mgattozzi/whorl

  single file, std only, async Rust executor

  Language:Rust5476126

• zaeleus/noodles

  Bioinformatics I/O libraries in Rust

  Language:Rust5362122653

• iains/gcc-darwin-arm64

  GCC master branch for Darwin with experimental support for Arm64. Currently GCC-15.0.0 [January 2025]

  Language:C++2741911933

• rcedgar/muscle

  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

  Language:C++22777723

• jean-pierreBoth/hnswlib-rs

  Rust implementation of the HNSW algorithm (Malkov-Yashunin)

  Language:Rust15771222

• js1010/cuhnsw

  CUDA implementation of Hierarchical Navigable Small World Graph algorithm

  Language:Cuda1485623

• Daniel-Liu-c0deb0t/block-aligner

  SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

  Language:Jupyter Notebook1287227

• ritchie46/lsh-rs

  Locality Sensitive Hashing in Rust with Python bindings

  Language:Rust11241119

• Daniel-Liu-c0deb0t/triple_accel

  Rust edit distance routines accelerated using SIMD. Supports fast Hamming, Levenshtein, restricted Damerau-Levenshtein, etc. distance calculations and string search.

  Language:Rust10661313

• pmartinezarbizu/pairwiseAdonis

  Pairwise multilevel comparison using adonis

  Language:R7264324

• soedinglab/WIsH

  Predict prokaryotic host for phage metagenomic sequences

  Language:C++528610

• jltsiren/simple-sds

  Simple succinct data structures (in Rust)

  Language:Rust501068

• fastqc-rs/fastqc-rs

  A quality control tool for FASTQ files written in rust

  Language:Rust40266

• jlw-ecoevo/gRodon2

  Language:R403134

• kornelski/vpsearch

  C library for finding nearest (most similar) element in a set

  Language:Rust32646

• chfi/rs-gfa

  GFA parser in Rust

  Language:Rust299311

• mbhall88/psdm

  Compute a pairwise SNP distance matrix from one or two alignment(s)

  Language:Rust24321

• unipept/FragGeneScanRs

  Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.

  Language:Rust247101

• sharpton/shotmap

  A Shotgun Metagenome Annotation Pipeline

  Language:Perl238816

• oertl/treeminhash

  TreeMinHash: Fast Sketching for Weighted Jaccard Similarity Estimation

  Language:C++14403

• biobakery/MTX_model

  R package for differential expression analysis in metatranscriptomics

  Language:R91056

• JosephTLyons/lineman

  Clean up the lines of files in your code repository

  Language:Rust42101

• luizirber/async-std

  Async version of the Rust standard library

  Language:Rust1201