khoerol

khoerol's Stars

• Pierian-Data/Complete-Python-3-Bootcamp

  Course Files for Complete Python 3 Bootcamp Course on Udemy

  Language:Jupyter Notebook27.5k2.7k35385.3k

• benjjneb/dada2

  Accurate sample inference from amplicon data with single nucleotide resolution

  Language:R469392k142

• fbreitwieser/pavian

  🌈 Interactive analysis of metagenomics data

  Language:R3892011875

• picrust/picrust2

  Code, unit tests, and tutorials for running PICRUSt2

  Language:Python32724321104

• jenniferlu717/KrakenTools

  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

  Language:Python315118589

• DaehwanKimLab/centrifuge

  Classifier for metagenomic sequences

  Language:C++2491426973

• cafferychen777/ggpicrust2

  Make Picrust2 Output Analysis and Visualization Easier

  Language:R108210312

• genomicsITER/NanoCLUST

  NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads

  Language:Nextflow10658748

• sherrillmix/taxonomizr

  Parse NCBI taxonomy and accessions to find taxonomic assignments

  Language:R7056610

• ksahlin/NGSpeciesID

  Reference-free clustering and consensus forming of long-read amplicon sequencing

  Language:Python5052216

• Saskia-Oosterbroek/decona

  fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads

  Language:Shell4364412

• ycl6/16S-rDNA-V3-V4

  16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

  Language:R334718

• olabiyi/snakemake-workflow-qiime2

  Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2

  Language:Python13102