Issues
- 0
Memory for more than 50 sequences with length of 250K
#118 opened by Yaoyx - 1
Average Contribution Score
#116 opened by shunyasanuma - 1
AssertionError when run tf-modisco
#117 opened by Jie-Lii - 1
- 1
Non-zeros in pattern["task0_contrib_scores"]["fwd"]
#114 opened by Yaoyx - 1
Mean-normalize hypothetical contributions
#113 opened by FelixWaern - 5
ValueError: perplexity must be less than n_samples
#112 opened by velten-lab - 1
TypeError with PCA Initialization in TensorFlow-Modisco: Seeking Advice for Sparse Matrix Handling
#111 opened by JoneSu1 - 1
- 4
- 0
- 9
question about hypothetical contribs + "cannot do a non-empty take from an empty axes" error
#95 opened by Sakurag1l - 4
Confusion with negative motifs
#109 opened by PelFritz - 2
- 1
Any considerations for RNA motif discovery because of Coarse-Grained Affinity Matrix Computation?
#105 opened by AidenSb - 10
How to extract seqlets
#100 opened by PelFritz - 0
Which settings of modisco should I change
#104 opened by PelFritz - 1
- 6
TfModiscoWorkflow breaks at coo_mat
#96 opened by mehrankr - 3
- 4
AssertionError: 50 1 in `assert len(fwd)==len(rev),str(len(fwd))+" "+str(len(rev))`
#74 opened by ofiryaish - 1
Bug in checking weights sum to 1
#81 opened by BeyondTheProof - 10
- 2
- 1
Unexpected keyword argument 'kmer_len' in constructor call of modisco.tfmodisco_workflow.seqlets_to_patterns.TfModiscoSeqletsToPatternsFactory
#71 opened by ofiryaish - 4
"UnboundLocalError: local variable 'motif' referenced before assignment" in some runs
#66 opened by ofiryaish - 0
ModuleNotFoundError: No module named 'modisco.visualization'; 'modisco' is not a package
#65 opened by ofiryaish - 1
- 4
memory usage bottleneck
#49 opened by hy395 - 2
viz_sequence plot
#41 opened by MMostavi - 4
NaN or High value for dtype float32
#33 opened by TommyJW - 6
Support for win32
#32 opened by TommyJW - 5
Using without tasks
#31 opened by TommyJW - 2
- 0
- 6
- 10
hypothetical importance scores
#5 opened by dmaloneynygc - 3
self.seqlet_aggregator return empty list
#6 opened by s6juncheng - 1
Installation error
#1 opened by s6juncheng