liyu95/DeepSimulator
The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
C
Issues
- 3
- 0
Where is DTW performed during training? What is the Signal_To_Event binary doing? Still maintained?
#58 opened by maximilianmordig - 0
- 0
Questions about the usage of this tool
#56 opened by HLHsieh - 0
Events at the output Fast5
#55 opened by parsboy66 - 0
length of the reads
#54 opened by parsboy66 - 0
Is this model still being developed?
#53 opened by raadmahmoudkromek - 0
double number of reads given by -n read_num
#52 opened by Psy-Fer - 0
Issue with small reference contigs
#51 opened by Csam488 - 5
Related to tuning of Repeat time
#50 opened by subhasiny - 1
mapping from alignment paf file or pass/fail.fastq to the sampled_read_processed_genome_*.fasta
#48 opened by YantingHuang - 7
[suggestion] update for latest conda/python
#24 opened by zdk123 - 2
multi fasta input
#39 opened by alstonius - 0
replicate read id
#47 opened by N-damo - 2
RNA-seq simulation
#9 opened by daniellezhang - 2
- 2
TensorFlow
#43 opened by solomonchak - 1
dRNA with or without modifications?
#40 opened by pabloacera - 1
Error in pore_model.sh
#44 opened by Jenny-dan - 1
Issue about same repeated simulates
#42 opened by renzilin - 3
Bug in checking accuracy
#41 opened by renzilin - 0
- 1
Install on MacOs
#37 opened by arsthilaire - 2
steps for training
#18 opened by brianwalenz - 10
Pre-process input error with a multiple chromosome file like 'GRCh38.p12.genome.fa'
#33 opened by zhixue - 5
DeepSimulator (branch discontinuous-fasta) dosen't handle multi-line fasta files correctly
#31 opened by yjx1217 - 3
Amplicon reads simulation
#32 opened by MaestSi - 2
- 5
- 2
- 2
Short strands sequencing
#25 opened by evgisa - 1
libcuda.so.1 problem when run deep_simulator.sh
#28 opened by Lemon-Liu - 0
some questions about the model graph code
#27 opened by huangnengCSU - 12
new error model
#21 opened by yjx1217 - 2
read length
#22 opened by rberrens - 8
About Low pass filter and tuning sample
#19 opened by AriBad - 2
- 3
Under-sampling both ends of reference genome
#16 opened by evgisa - 1
- 3
- 2
- 11
confusion about the output
#8 opened by daniellezhang - 2
-M simulator parameter
#12 opened by evgisa - 1
Unable to run the install script
#10 opened by samyuktr - 3
Default length distribution
#11 opened by evgisa - 1
output directory
#7 opened by jelfiedia - 4
Raw signal per called base
#5 opened by MMAThijssen - 4
- 1
install problem
#3 opened by whc2 - 4