mcshane's Stars
bcicen/ctop
Top-like interface for container metrics
matze/mtheme
A modern LaTeX Beamer theme
basho/riak
Riak is a decentralized datastore from Basho Technologies.
OpenGene/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
chhylp123/hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
ruanjue/wtdbg2
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
lh3/minigraph
Sequence-to-graph mapper and graph generator
marbl/verkko
Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
marbl/merqury
k-mer based assembly evaluation
chanzuckerberg/shasta
[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
KamilSJaron/smudgeplot
Inference of ploidy and heterozygosity structure using whole genome sequencing data
dfguan/purge_dups
haplotypic duplication identification tool
cmdcolin/oddgenes
A small database of weird gene annotations
artic-network/artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
ekg/seqwish
alignment to variation graph inducer
pirovc/genome_updater
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy
c-zhou/yahs
Yet another Hi-C scaffolding tool
odelaneau/shapeit4
Segmented HAPlotype Estimation and Imputation Tool
brwnj/covviz
Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
richarddurbin/modimizer
a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
dfguan/asset
assembly evaluation tool
stjudecloud/workflows
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
c-zhou/oatk
A organelle de novo genome assembly toolkit
darwintreeoflife/darwintreeoflife.data
Interim data for the Darwin Tree of Life Project
sanger-tol/genomeassembly
Implementation of ToL genome assembly workflows
skingan/adapt_PurgeHaplotigs_for_FALCONPhase
Convert output of purge haplotigs to format compatible with FALCON-Phase
VGP/vgp.github.io
CobiontID/MarkerScan
This repository contains a Snakemake pipeline which determines the species composition of the sample by SSU presence and separates them accordingly.
AndreaGuarracino/opentrons
dfguan/asset-prev
assembly evaluation tool