meyer-lab/DDMC

Issues

• Describe Fixed PAM250 method in manuscript

  #457 opened 6 months ago by mcreixell
  2

• Make DDMC return validated substrates

  #523 opened 2 years ago by mcreixell
  1

• Figure M7: Peptides tracking HTE / CTE samples

  #519 opened 2 years ago by mcreixell
  0

• Notes on AXL manuscript Fig. 1

  #511 opened 2 years ago by aarmey
  0

• Invadopodia assay

  #483 opened 2 years ago by mcreixell
  1

• Island effect methods section

  #399 opened 3 years ago by mcreixell
  0

• Notes space for comparing different clustering methods

  #508 opened 3 years ago by aarmey
  2

• Predictions

  #507 opened 3 years ago by mcreixell
  2

• Discuss GSEA plots

  #506 opened 3 years ago by mcreixell
  0

• Word document export error

  #492 opened 3 years ago by mcreixell
  2

• Muting randomized_svd warning

  #503 opened 3 years ago by mcreixell
  3

• Throw data of a single well from an Incucyte Exp

  #464 opened 3 years ago by mcreixell
  3

• NEK/YAP axis

  #414 opened 3 years ago by mcreixell
  1

• Dasatinib Dose Response Mass Spec

  #431 opened 3 years ago by mcreixell
  4

• Check content of AXL clusters 2&3: PC2 drivers

  #342 opened 3 years ago by mcreixell
  0

• Challenges of Motif Analysis

  #395 opened 3 years ago by mcreixell
  1

• Figure 3

  #423 opened 3 years ago by mcreixell
  2

• Tentative Interpretation Scheme

  #429 opened 3 years ago by mcreixell
  7

• Tweak LR figure 5 to pick up cluster 7 & 8

  #424 opened 3 years ago by mcreixell
  0

• Improve upstream kinase plot

  #415 opened 3 years ago by mcreixell
  0

• Gene expression of upstream kinases / Mutations in COSMIC

  #417 opened 3 years ago by mcreixell
  0

• Update Shuffle figure

  #410 opened 3 years ago by mcreixell
  0

• Methods manuscript layout

  #406 opened 3 years ago by mcreixell
  1

• Strip plot with mean AUC s?

  #405 opened 3 years ago by mcreixell
  2

• PSSM calculation by Seq Score

  #402 opened 3 years ago by mcreixell
  1

• 2 fits although nRepeats=1

  #384 opened 3 years ago by mcreixell
  4

• Unable to find mass spec data

  #378 opened 3 years ago by mcreixell
  2

• STK11 modulates immune infiltration

  #357 opened 3 years ago by mcreixell
  5

• Sequence improves prediction?

  #354 opened 3 years ago by mcreixell
  1

• Worse predictions of genotypes when excluding NATs

  #315 opened 3 years ago by mcreixell
  12

• Wrong normalization axis on infiltration data

  #358 opened 3 years ago by mcreixell
  4

• SLK, PAK2, ERK2 as tumor suppressors

  #346 opened 3 years ago by mcreixell
  0

• Fix FigS1 ylim

  #336 opened 3 years ago by mcreixell
  0

• FigureM2

  #283 opened 3 years ago by mcreixell
  4

• Irreproducible results using LASSO with unclustered data

  #340 opened 3 years ago by mcreixell
  0

• Fix pY357 bands in blot

  #338 opened 3 years ago by mcreixell
  0

• Unrealistic motif cluster 9 CPTAC

  #341 opened 3 years ago by mcreixell
  0

• Update FigM1 diagram

  #335 opened 3 years ago by mcreixell
  0

• Send merged AXL MS data to Kristen Naegle with Uniprot Acc

  #325 opened 3 years ago by mcreixell
  0

• Illustrating Uptream Kinase

  #308 opened 3 years ago by mcreixell
  6

• Explore further genotypes with new cluster data

  #322 opened 3 years ago by mcreixell
  0

• Add supplemental figures to manuscript

  #314 opened 4 years ago by mcreixell
  0

• Figures2,3&4 Text

  #307 opened 4 years ago by mcreixell
  0

• Max n of clusters

  #311 opened 4 years ago by mcreixell
  0

• Update Methods section with MDS

  #288 opened 4 years ago by mcreixell
  0

• NaNs in PSSMs

  #294 opened 4 years ago by aarmey
  2

• Hypothesis testing

  #295 opened 4 years ago by mcreixell
  2

• All AXL and CPTAC motifs for Supplemental

  #296 opened 4 years ago by mcreixell
  0

• Phosphoacceptor-specific upstream kinase prediction?

  #290 opened 4 years ago by mcreixell
  1

• Predict combination of mutants

  #281 opened 4 years ago by mcreixell
  0