nextflow-io/training

Issues

• Module proposal: hello-channels

  #367 opened 3 months ago by adamrtalbot
  5

• Explain the samplesheet fully

  #380 opened 3 months ago by vdauwera
  0

• Module proposal: hello-config

  #370 opened 3 months ago by adamrtalbot
  0

• Use Nextflow stable version 24.04.4

  #365 opened 3 months ago by adamrtalbot
  3

• Add -resume step to Hello World

  #356 opened 3 months ago by vdauwera
  1

• Cover use of multiple input channels

  #359 opened 3 months ago by vdauwera
  1

• Add comment about integration test to "Provide inputs using the setup method"

  #363 opened 3 months ago by vdauwera
  0

• Add example of using a remote module

  #362 opened 3 months ago by vdauwera
  0

• Replace technical explanation of channels with a simpler/concrete explanation

  #361 opened 3 months ago by vdauwera
  0

• Idea: Optional topic-specific deep dive training modules branching off of the Hello series

  #360 opened 3 months ago by vdauwera
  0

• Fix the bad constructor earlier in Hello GATK pt 3

  #354 opened 3 months ago by vdauwera
  0

• Fix projectDir weirdness

  #355 opened 3 months ago by vdauwera
  0

• Cover PublishDir and workflow-level outputs

  #357 opened 3 months ago by vdauwera
  0

• Cover nextflow clean

  #358 opened 3 months ago by vdauwera
  0

• Add docs warning for un-desired behaviour when using System.exit()

  #343 opened 6 months ago by dlejeune
  2

• Broken link on Deployment Scenarios page

  #340 opened 6 months ago by wasimsandhu
  1

• hello_nextflow lesson uses deprecated implicit variable and channel factory

  #336 opened 6 months ago by ggrimes
  0

• `bin` folder not supported in latest NextFlow

  #327 opened 8 months ago by VasLem
  3

• gghist.R does not exist in cbcrg/callings-with-gatk:latest

  #303 opened 10 months ago by Xophmeister
  2

• Incorrect solution in Basic Training > Configuration > Config params

  #295 opened a year ago by alanzos
  1

• Proposal for applications specific training material

  #286 opened a year ago by lescai
  0

• Add Gitpod instructions to hands-on training

  #258 opened a year ago by mribeirodantas
  0

• Hands-On Tutorial - "Nextflow DSL1 is no longer supported — Update your script to DSL2"

  #255 opened a year ago by felixm3
  8

• Fix highlighted lines in code snippets for the hands-on training

  #261 opened a year ago by mribeirodantas
  0

• Convert hands-on training to DSL2

  #257 opened a year ago by mribeirodantas
  0

• Update training with new `splitJson` operator

  #241 opened a year ago by mribeirodantas
  0

• Regarding of fastqc custom script

  #244 opened 2 years ago by hmkim
  3

• Section 5.2.6 fromSRA hangs

  #126 opened 2 years ago by sktrinh12
  6

• `nextflow run nextflow-io/rnaseq-nf -with-docker` fails "Is a directory"

  #214 opened 2 years ago by mribeirodantas
  1

• Initiate the french translation

  #224 opened 2 years ago by justicengom
  4

• Translate Getting Help to Portuguese

  #228 opened 2 years ago by mribeirodantas
  1

• nextflow seems to allow multiple variables with the same name in the same scope

  #231 opened 2 years ago by jgbaum
  3

• Question: What does input of "path '*'" do in script6.nf?

  #229 opened 2 years ago by jgbaum
  1

• Translate images strings into Portuguese

  #170 opened 2 years ago by mribeirodantas
  2

• Translate image strings into Spanish

  #171 opened 2 years ago by mribeirodantas
  0

• Improve indentation, code style and pipeline/workflow usage consistency

  #209 opened 2 years ago by mribeirodantas
  3

• Review/do Portuguese version of the Basic Training

  #210 opened 2 years ago by mribeirodantas
  0

• Translate cache and resume section of the basic training to Portuguese

  #193 opened 2 years ago by mribeirodantas
  2

• Hello World it

  #200 opened 2 years ago by DarioS
  0

• Translate deployment scenarios section of the basic training to Portuguese

  #191 opened 2 years ago by mribeirodantas
  0

• Translate Modularization section of the basic training to Portuguese

  #190 opened 2 years ago by mribeirodantas
  3

• Translate Tower section of the basic training to Portuguese

  #192 opened 2 years ago by mribeirodantas
  0

• Gitpod container image is failing to build

  #181 opened 2 years ago by mribeirodantas
  1

• Use main header enumeration package instead of my fork

  #183 opened 2 years ago by ewels
  0

• Local deployment is failing

  #176 opened 2 years ago by mribeirodantas
  5

• Preview with gitpod is broken

  #158 opened 2 years ago by chriswyatt1
  2

• Connectivity issues

  #157 opened 2 years ago by chriswyatt1
  1

• Page summary information is not clear

  #156 opened 2 years ago by chriswyatt1
  0

• Add gitpod buttons

  #148 opened 2 years ago by ewels
  0

• Missing code

  #142 opened 2 years ago by pditommaso
  1