nlawlor

nlawlor's Stars

• dreamRs/esquisse

  RStudio add-in to make plots interactively with ggplot2

  Language:R1.8k51229229

• ThinkR-open/golem

  A Framework for Building Robust Shiny Apps

  Language:R90423635132

• TheAlgorithms/R

  Collection of various algorithms implemented in R.

  Language:R8406725289

• csgillespie/efficientR

  Efficient R programming: a book

  Language:TeX72048107373

• mikelove/awesome-multi-omics

  List of software packages for multi-omics analysis

  708536161

• cellgeni/sceasy

  A package to help convert different single-cell data formats to each other

  Language:R37087653

• theislab/cellrank

  CellRank: dynamics from multi-view single-cell data

  Language:Python342871047

• const-ae/ggupset

  Combination matrix axis for 'ggplot2' to create 'UpSet' plots

  Language:R33373721

• theislab/scarches

  Reference mapping for single-cell genomics

  Language:Jupyter Notebook3271216451

• PhanstielLab/plotgardener

  Language:R29889028

• kolaczyk/sand

  Statistical Analysis of Network Data with R, 2nd Edition

  Language:R293248195

• Teichlab/celltypist

  A tool for semi-automatic cell type classification

  Language:Python280811844

• broadinstitute/ssGSEA2.0

  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

  Language:R234133179

• kaizhang/SnapATAC2

  Single-cell epigenomics analysis tools

  Language:Python218827823

• omarwagih/ggseqlogo

  Publication-quality sequence logos in R

  Language:R202133530

• stefpeschel/NetCoMi

  Network construction, analysis, and comparison for microbial compositional data

  Language:R149712327

• qiita-spots/qiita

  Qiita - A multi-omics databasing effort

  Language:Python120211.5k80

• bigomics/omicsplayground

  Visual self-service analytics platform for big omics data.

  Language:R118457235

• harbourlab/SparK

  Publication quality NGS track plotting

  Language:Python10351620

• swaruplab/Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease

  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease

  Language:R8111230

• single-cell-genetics/cellSNP

  Pileup biallelic SNPs from single-cell and bulk RNA-seq data

  Language:Python7462211

• lch14forever/microbiomeViz

  Visualize microbiome data with black magic ggtree

  Language:R6861514

• FrederickHuangLin/ANCOM-Code-Archive

  Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM function.

  Language:R574040

• Svvord/iMAP

  A novel unsupervised batch removal framework, called iMAP, based on neural networks.

  Language:Jupyter Notebook35254

• UcarLab/AMULET

  A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.

  Language:Python294235

• MG-RAST/matR

  Metagenomics Analysis Tools

  Language:R25162410

• lmweber/deconvolution-papers

  List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures

  18503

• EvaYiwenWang/PLSDAbatch_workflow

  Language:R17358

• SegataLab/repophlan

  Language:Python5432

• integrativenetworkbiology/DeClust

  A reference-free deconvolution method to infer cancer cell-intrinsic subtypes and tumor-type-specific stromal profiles

  Language:R12