stefpeschel/NetCoMi

Issues

• fdrtool error during diffnet

  #129 opened 3 months ago by Siupek
  0

• Issue with node size and netCompare

  #124 opened 6 months ago by alexmsalmeida
  5

• Problem with the targets IDs in export to gephi

  #121 opened 4 months ago by JEALabmio
  4

• Highlighting specific hubs in the graph

  #128 opened 4 months ago by Lucifer1814
  0

• Comparing more than two groups of samples in NetCoMi

  #127 opened 4 months ago by fredoowarren
  0

• Adding a CITATION.cff file with the article information to help software citation

  #126 opened 4 months ago by sayalaruano
  0

• Looking for guidance on MANs Inference with samples from different metagenomics/metatranscriptomics studies

  #117 opened 8 months ago by sayalaruano
  4

• How to easily understand the GCM heatmap

  #125 opened 5 months ago by Ivy-ops
  0

• Understanding netConstruct() output

  #123 opened 6 months ago by wfgui
  1

• including correlations with environmental or experimental variables?

  #122 opened 6 months ago by danchurch
  3

• Could I manually modify the color of each node?

  #120 opened 7 months ago by ChihYingLu
  2

• edges dont color correctly with negative correlations

  #119 opened 7 months ago by gastronaut82
  2

• Error in NetConstruct for network comparison : "subscript out of bounds"

  #118 opened 8 months ago by sarahkosh
  4

• Cross domain interactions

  #115 opened 8 months ago by TeeratatK
  3

• calculate the betweenness centrality as hubs

  #116 opened 8 months ago by Wensi13579
  2

• stability values using spieceasi

  #108 opened 9 months ago by lixiaopi1985
  1

• Labelling only certain taxa of interest

  #113 opened 9 months ago by devarajarun
  1

• Will this package works for all lineage levels?

  #114 opened 9 months ago by shibormi
  0

• How to look at sub-clusters?

  #105 opened 9 months ago by bridgeto
  1

• output format for Gephi visualization

  #106 opened 9 months ago by ladywaspzhu
  2

• RNA-seq data(Plant)

  #111 opened 9 months ago by zjDzlll
  1

• Error in length of dimnames after permutation testing

  #112 opened 10 months ago by joshqsumner
  1

• problems with arm64 build

  #98 opened a year ago by ep142
  4

• Colored by phylum

  #107 opened a year ago by estebannieto93
  2

• How to find a "good" algorithm and parameter set

  #110 opened a year ago by antonkratz
  1

• Problems while installing the NetCoMi

  #109 opened a year ago by Ilaria-Pirona
  1

• Plotting with different line style

  #103 opened a year ago by indrikwijaya
  2

• Change edge width range

  #101 opened a year ago by danpal96
  2

• Edges with correlation value == -1 are not displayed in signed mode

  #104 opened a year ago by danpal96
  4

• Calculating the Withing module degree (Z) and participation coefficient (P) values

  #102 opened a year ago by drbmanna
  2

• Association matrices when comparing networks

  #96 opened a year ago by gastronaut82
  1

• saving a plot

  #99 opened a year ago by hyoj-seo
  1

• Filtering before running Netcomi

  #100 opened a year ago by Anaskou
  1

• ccrepe filter based on p-values

  #97 opened a year ago by indrikwijaya
  2

• nodeshape according to sample type

  #94 opened a year ago by chrissy005
  1

• SPRING network with no edges - "The data does not contain zeros" warning

  #95 opened a year ago by sayalaruano
  5

• rename labels node

  #91 opened a year ago by ZiliaMR
  2

• Multithreading not working

  #89 opened a year ago by bioInfoGirl
  1

• Change node shape according to taxonomy

  #92 opened a year ago by nicolereynolds2
  1

• Error in .checkArgsPlotHeat(argsIn) : "mat" must be a numeric matrix

  #93 opened a year ago by Dirrrrty
  2

• Problem to install NetCoMi

  #87 opened 2 years ago by Fla1487
  18

• Networks with multiple conditions

  #90 opened a year ago by andressamv
  1

• Compare two conditions in one network

  #86 opened 2 years ago by linux51
  2

• In a few cases, class assignment by DISCORDANT seems to contradict the associations from the two input networks

  #85 opened 2 years ago by antonkratz
  6

• Sequences on the network plot instead of taxa

  #88 opened 2 years ago by MicrobEva
  3

• problems about installation

  #82 opened 2 years ago by TSH1993
  1

• freeze on permutation test (differential network analysis)

  #81 opened 2 years ago by katerinka-arh
  5

• How to interpret SPRING correlation values?

  #84 opened 2 years ago by antonkratz
  1

• could not find function "renameTaxa"

  #83 opened 2 years ago by JBL05
  2

• Adjusting parameters for cclasso in NetConstruct()

  #80 opened 2 years ago by SMBKrause
  2