qhelleu

qhelleu's Stars

• cxli233/FriendsDontLetFriends

  Friends don't let friends make certain types of data visualization - What are they and why are they bad.

  Language:R6.4k1147247

• simonhmartin/genomics_general

  General tools for genomic analyses.

  Language:Python341912093

• daler/gffutils

  GFF and GTF file manipulation and interconversion

  Language:Python2871414878

• Cibiv/IQ-TREE

  Efficient phylogenomic software by maximum likelihood

  Language:C++1861823744

• tskit-dev/msprime

  Simulate genealogical trees and genomic sequence data using population genetic models

  Language:Python177191k88

• Gaius-Augustus/GALBA

  GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

  Language:Perl13010344

• Gabaldonlab/redundans

  Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

  Language:C++129810520

• sanger-pathogens/assembly-stats

  Get assembly statistics from FASTA and FASTQ files

  Language:C++11518523

• NAL-i5K/GFF3toolkit

  Python programs for processing GFF3 files

  Language:Python95133927

• uqrmaie1/admixtools

  Language:R7457714

• evolbioinfo/goalign

  Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.

  Language:Go7313138

• genomeannotation/GAG

  Generates an NCBI .tbl file of annotations on a genome.

  Language:Python641518220

• ksahlin/BESST

  BESST - scaffolder for genomic assemblies

  Language:Python5776513

• hsinnan75/MapCaller

  MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes

  Language:C304685

• vice87/gam-ngs

  Genomic Assemblies Merger for NGS

  Language:C++2672710

• lpryszcz/pyScaf

  Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.

  Language:Python2461111

• rikuu/Gap2Seq

  Gap2Seq is a gap filling and insertion genotyping tool.

  Language:C++193167

• josephryan/sowhat

  Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)

  Language:Perl107344

• Gabaldonlab/phylomizer

  PhylomeDB automated pipeline for reconstructing high-quality phylogenetic tree

  Language:Python75174

• mtholder/TreeTopoTestingTalks

  scripts, figures, bibliography data, and notes for giving talks about confidence limits and tests on phylogenetic trees

  Language:Mathematica6402

• jschellh/ProtSpaM

  Language:C++221