rajaldebnath
Microbial ecology | Microbiology | Bioinformatics https://scholar.google.com/citations?user=hiB40poAAAAJ&hl=en
Central Silk BoardIndia
rajaldebnath's Stars
griffithlab/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
LangilleLab/microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
YongxinLiu/MicrobiomeStatPlot
Interpretation and visualization of microbiome charts
microbiome/microbiome
microbiome R package
biocore/qiime
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
taowenmicro/EasyMicrobiomeR
Using R language in microbiome analysis
showteeth/ggcoverage
Visualize and annotate genomic coverage with ggplot2
rmhubley/RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
NBISweden/GAAS
Genome Assembly and Annotation Service code
yiluheihei/microbiomeMarker
R package for microbiome biomarker discovery
biocore/emp
Code repository of the Earth Microbiome Project.
eldariont/svim
Structural Variant Identification Method using Long Reads
hewm2008/NGenomeSyn
Any Way to Show Multi genomic Synteny
davetang/learning_vcf_file
Learning the Variant Call Format
xia-lab/MicrobiomeAnalystR
A companion R package for the MicrobiomeAnalyst web server
microsud/Tools-Microbiome-Analysis
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
grimmlab/MicrobiomeBestPracticeReview
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
griffithlab/rnabio.org
website for the rnaseq course
microbiome/OMA
Orchestrating Microbiome Analysis
zoecastillo/microbiomeExplorer
The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or through a Shiny application. Written by Janina Reeder and Joseph N. Paulson.
lch14forever/microbiomeViz
Visualize microbiome data with black magic ggtree
cduvallet/microbiomeHD
Cross-disease comparison of case-control gut microbiome studies
NIH-HPC/Singularity-Tutorial
How to use Singularity!
umerijaz/microbiomeSeq
An R package for microbial community analysis in an environmental context
GRONINGEN-MICROBIOME-CENTRE/Groningen-Microbiome
Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen
YongxinLiu/MicrobiomeProtocol
Microbiome Protocol eBook related documents and scripts.
pdimens/LepWrap
A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
sschmeier/refseq2kraken
Download refseq-genomic data and prepare it for Kraken
msjimc/circularMT
rajaldebnath/pyani
Application and Python module for average nucleotide identity analyses of microbes.