Issues
- 0
- 0
INV score not calculating
#68 opened by avictorsen - 3
SVIM 2.0.0 in conda
#58 opened by Akazhiel - 0
bioconda install
#67 opened by Noczio - 0
pos of interspersed duplication
#66 opened by bakeronit - 0
Error question. Please delete.
#65 opened by leone93 - 0
Multi-sample processing
#64 opened by YahGao - 3
population call with svim
#48 opened by Chenglin20170390 - 0
Start position
#63 opened by Akazhiel - 2
[BUG] Unsorted positions on sequence
#61 opened by Irallia - 0
Fail to get the svim_evaluation.zip
#62 opened by SQLiu-youyou - 0
- 2
Reference allele missing
#56 opened by Akazhiel - 8
Alignment pipeline error
#39 opened by camilogarciabotero - 2
Reads supporting BND events
#57 opened by Akazhiel - 5
how many calls should we expect?
#59 opened by woodoo46 - 1
Reversed start and end of BND
#54 opened by charliechen912ilovbash - 4
Understanding the scoring?
#26 opened by alelim-bio - 1
Add output name options
#55 opened by Akazhiel - 1
Understand the output?
#52 opened by wenbinmei - 2
Confusion about output
#53 opened by cgrootcrego - 2
- 4
parameter settings for more support reads
#51 opened by yekaizhou - 2
Improved Documentation
#49 opened by CharlesARoy - 1
Low number of interspersed duplications?
#50 opened by GuillaumeHolley - 1
The genotype of the variants.vcf file were ./.
#46 opened by Xuelei-Dai - 2
- 1
SVIM tries to use deprecated Numpy feature
#45 opened by InvisOn - 1
svim alignment error
#43 opened by lukaslee1127 - 1
using svim alignment to genotype, all the tandem duplications show missing value
#44 opened by lx-4199 - 2
the recommended sequencing depth
#41 opened by charliechen912ilovbash - 1
- 5
Underflow on variant position?
#38 opened by wdecoster - 3
MemoryError
#37 opened by Boer223 - 3
SV types in output VCF
#28 opened by shimbalama - 5
(Almost) no insertions
#36 opened by LizzieMcDizzie - 3
ERROR when using assembly-vs-assembly BAM as input
#34 opened by biozzq - 1
raw reads or corrected reads ?
#35 opened by ptranvan - 1
- 2
Check existence of bam index upfront
#33 opened by SHuang-Broad - 4
Phasing interpretation
#31 opened by javibio-git - 2
- 3
FORMAT 'CN' is not defined in the header
#29 opened by zihhuafang - 8
pysam error
#27 opened by ndierckx - 4
Wrong SVLEN values
#24 opened by ricardovialle - 3
complex events detection
#25 opened by jiadong324 - 4
Suggestion: Add BEDPE as an optional output
#23 opened by Dfupa - 4
- 2
issue when reading sam/bam of empty SEQ field
#21 opened by xp3i4 - 5
bam index not found
#20 opened by webbchen