raufs

raufs's Stars

• thomasp85/patchwork

  The Composer of ggplots

  Language:R2.5k46357163

• moshi4/pyCirclize

  Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

  Language:Python789104550

• weizhongli/cdhit

  Automatically exported from code.google.com/p/cdhit

  Language:Perl65128133130

• mummer4/mummer

  Mummer alignment tool

  Language:C++47621203108

• shenwei356/taxonkit

  A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

  Language:Go388810132

• broadinstitute/pilon

  Pilon is an automated genome assembly improvement and variant detection tool

  Language:Scala3442917060

• moshi4/pyGenomeViz

  A genome visualization python package for comparative genomics

  Language:Python29735023

• sortmerna/sortmerna

  SortMeRNA: next-generation sequence filtering and alignment tool

  Language:C++2481532067

• jiarong/VirSorter2

  customizable pipeline to identify viral sequences from (meta)genomic data

  Language:Python233321533

• linsalrob/ComputationalGenomicsManual

  Robs manual for the computational genomics and bioinformatics class.

  Language:HTML22811161

• peterjc/biopython_workshop

  A basic introduction to Biopython, intended for a classroom based workshop

  Language:Python21720156

• widdowquinn/pyani

  Application and Python module for average nucleotide identity analyses of microbes.

  Language:Python1991225655

• tycho-kirchner/shournal

  Log shell-commands and used files. Snapshot executed scripts. Fully automatic.

  Language:C++176699

• briatte/ggnetwork

  Geoms to plot networks with ggplot2

  Language:HTML14786728

• althonos/pyhmmer

  Cython bindings and Python interface to HMMER3.

  Language:Cython13176812

• hahnlab/CAFE5

  Version 5 of the CAFE phylogenetics software

  Language:C++117714022

• iqbal-lab-org/pandora

  Pan-genome inference and genotyping with long noisy or short accurate reads

  Language:C++1121022414

• broadinstitute/catch

  A package for designing compact and comprehensive capture probe sets.

  Language:Python79142116

• nf-core/funcscan

  (Meta-)genome screening for functional and natural product gene sequences

  Language:Nextflow759815221

• linsalrob/PhiSpy

  Prediction of prophages from bacterial genomes

  Language:Jupyter Notebook73105521

• wwood/galah

  More scalable dereplication for metagenome assembled genomes

  Language:Rust4852312

• NBChub/bgcflow

  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)

  Language:Python3622149

• mbhall88/compression_benchmark

  Benchmarking FASTQ compression with 'mature' compression algorithms

  Language:Python31154

• linsalrob/sphae

  Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!

  Language:Python305129

• JoanaMPereira/GCsnap

  GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts

  Language:Python25354

• karel-brinda/MiniPhy

  Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]

  Language:Python217541

• althonos/pytrimal

  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!

  Language:Cython20222

• althonos/orthoani

  A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.

  Language:Python18432

• Sudaraka88/LDWeaver

  Genomewide Epistasis Analysis on Bacteria

  Language:R14210

• shenwei356/cluster_files

  cluster files into multiple directories by creating symbolic links or moving files

  Language:HTML320