Issues
- 1
Release name for 1.3.3 tag wrong
#136 opened by Flamefire - 0
Core dumped
#135 opened by seynard - 0
VCF with deletions
#134 opened by dmjask - 2
running extractHAIRS with very large maxIS
#133 opened by A-J-F-Mackintosh - 1
HapCUT2 does not phase this variant directly adjacent to another and overlapping another other.
#132 opened by jan-glx - 1
There is a bit of confusion about the hic model
#122 opened by YilinZhang449 - 1
Merge vcf when combine HiC+HiFi?
#129 opened by miaoxm2 - 1
Convert block file to vcf after pruning
#131 opened by pdimens - 2
About maximum insert size of Hi-C data
#130 opened by Yutang-ETH - 0
- 0
Error while running extractHAIRS
#127 opened by uncleflybfchen - 0
- 1
double free or corruption (out)
#121 opened by tiffuhu - 1
error while loading shared libraries: libhts.so.3
#120 opened by sandipmkale - 2
Is there a docker image for this tool?
#118 opened by gudeqing - 1
- 4
split blocks
#117 opened by ruqianl - 0
which pipeline is good for calling variants?
#106 opened by sunnycqcn - 1
- 3
multiple sequencing platform
#88 opened by wyim-pgl - 2
Segfault on extracthairs
#115 opened by klannert - 4
Only chr1 is phased.
#108 opened by zhpn1024 - 1
Only a small part of SNPs can be phased
#113 opened by JFF1594032292 - 2
HOMOZYGOUS_PRIOR too small
#110 opened by jzhang-dev - 5
Obtaining Phased Haplotypes
#111 opened by psur9757 - 4
Question: support for de novo SNV/INDEL variants
#112 opened by jbelyeu - 0
HapCutToVcf result deal
#109 opened by LILIHAN-001 - 1
HAPCUT2 error "segmentation fault (core dumped)"
#105 opened by kisudsoe - 2
Make error (htslib not found)
#104 opened by akijarl - 4
Phasing information from Supplementary alignments
#103 opened by MaestSi - 5
run_hapcut2_fosmid_data.sh fails
#101 opened by mathog - 11
- 1
Haplotype blocks between chromosomes
#100 opened by conchoecia - 1
Conda version outdated
#99 opened by StephenRicher - 0
HiC with HiC-Pro
#98 opened by Yujiaxin419 - 3
Release 1.3 build warnings patch
#97 opened by mathog - 6
prune_haplotype.py format change?
#84 opened by mdem7705 - 0
prune_haplotype.py got errors
#83 opened by nganphanthi - 5
core segemntaion fault
#89 opened by dhwani2410 - 1
hapcut2 what next
#81 opened by rob123king - 2
Valid [GT] accepted by extractHAIRS
#92 opened by agroppi - 1
output vcf headers
#95 opened by conchoecia - 4
Column order discrepancy between OS
#80 opened by FrickTobias - 8
10X Genomics data in hapCUT2
#90 opened by burri-wildlight - 4
Outdated README
#91 opened by FrickTobias - 2
Hi-C with bwa mem -5SPM
#94 opened by conchoecia - 2
Duitama et al. data download
#93 opened by robinweide - 1
Suggestion to make a new release
#86 opened by marcelm - 1
extractHAIRS for polyploids
#82 opened by sinamajidian - 4
MEC score
#79 opened by sinamajidian