vkedlian

vkedlian's Stars

• alexdobin/STAR

  RNA-seq aligner

  Language:C1.8k862k501

• aertslab/pySCENIC

  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

  Language:Python41618521178

• MarioniLab/miloR

  R package implementation of Milo for testing for differential abundance in KNN graphs

  Language:R333924422

• r-lib/remotes

  Install R packages from GitHub, GitLab, Bitbucket, git, svn repositories, URLs

  Language:R33115602152

• BayraktarLab/cell2location

  Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

  Language:Python304723456

• theislab/scgen

  Single cell perturbation prediction

  Language:Python26197752

• scverse/muon

  muon is a multimodal omics Python framework

  Language:Python2081410730

• theislab/scCODA

  A Bayesian model for compositional single-cell data analysis

  Language:Jupyter Notebook14799024

• Teichlab/bbknn

  Batch balanced KNN

  Language:Python141104723

• aertslab/SCENICprotocol

  A scalable SCENIC workflow for single-cell gene regulatory network analysis

  Language:Python138126062

• theislab/anndata2ri

  Convert between AnnData and SingleCellExperiment

  Language:Python12478516

• const-ae/glmGamPoi

  Fit Gamma-Poisson Generalized Linear Models Reliably

  Language:R10365814

• czbiohub-sf/tabula-muris-senis

  Tabula Muris Senis

  Language:Jupyter Notebook9395026

• SCCAF/sccaf

  Single-Cell Clustering Assessment Framework

  Language:Jupyter Notebook8762619

• catavallejos/BASiCS

  BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version

  Language:R83717016

• Teichlab/Pan_fetal_immune

  Collection of scripts for analysis of pan fetal immune atlas

  Language:Jupyter Notebook243186

• hemberg-lab/MicroExonator

  Snakemake pipeline for microexon discovery and quantification

  Language:Python196178

• Teichlab/sctk

  Language:Python187104

• theislab/ncem_tutorials

  Language:Jupyter Notebook11480

• emdann/momicsTools

  A collection of resources and knowledge for analysis of scATAC+scRNA multi omics data

  10200

• const-ae/CoefExplainer

  Understand How to Interpret the Coefficients of a Categorical Linear Model

  Language:R9201

• theislab/ncem_benchmarks

  Language:Jupyter Notebook8462

• GKild/scRNAseq_course

  EMBL-EBI single cell RNA-seq analysis in R course practicals

  Language:HTML7105

• iaaka/visutils

  set of function for qc and visualization of Visium data

  Language:R10

• Teichlab/sctkr

  A deposit of functions that perform common tasks for single cell analysis

  Language:R160