vpc-ccg/haslr

Issues

• final.fa is 0 kb

  #38 opened 2 years ago by bioramg
  2

• AttributeError: 'module' object has no attribute 'run'

  #31 opened 3 years ago by mictadlo
  1

• Assembling the test data does not generate an assembly

  #37 opened 2 years ago by methylome
  2

• Conda version does not produce final assembly

  #18 opened 4 years ago by pydupont
  6

• Missing result files

  #4 opened 5 years ago by bpucker
  27

• Clean raw data prior to assembly

  #36 opened 2 years ago by gargkritika
  0

• Error - std::bad_alloc during "calling consensus sequence between anchors"

  #5 opened 5 years ago by jpummil
  8

• ERROR: "haslr_assemble" returned non-zero exit status

  #35 opened 3 years ago by mictadlo
  0

• Much Shorter Assembly than Expected

  #30 opened 3 years ago by iek
  1

• Assembling pacbio, nanopore and illumina reads

  #34 opened 3 years ago by charles-gumbi
  2

• new release for bioconda

  #33 opened 3 years ago by mictadlo
  0

• lr0x.fasta... [ERROR] option -d/--depth is required

  #32 opened 3 years ago by mictadlo
  1

• Short Homo Sapien Assembly from Genome in a Bottle Data

  #23 opened 4 years ago by NTNguyen13
  10

• kmer determination

  #29 opened 3 years ago by mictadlo
  0

• Polishing example

  #14 opened 5 years ago by pallevillesen
  1

• Why all backbone and asm file are empty?

  #13 opened 5 years ago by xiekunwhy
  6

• Does this tool do phasing?

  #28 opened 4 years ago by ardy20
  0

• Failing while checking minia

  #26 opened 4 years ago by Oieswarya
  0

• question multiple libraries?

  #27 opened 4 years ago by asgiraldoc
  0

• assembling long reads using HASLR... failed

  #16 opened 5 years ago by HanKMU
  2

• Changing K-mer size of Minia leads to final fasta of zero bits

  #25 opened 4 years ago by desmodus1984
  0

• Multiple long read files in the latest version

  #24 opened 4 years ago by xie186
  0

• assembling long reads using HASLR... failed ERROR

  #20 opened 4 years ago by koujiaodahan
  9

• Bug while running script: "could not find file"

  #22 opened 4 years ago by asan-emirsaleh
  0

• Debug Message in log File

  #21 opened 4 years ago by heathheckman
  0

• speed running

  #19 opened 4 years ago by koujiaodahan
  14

• HASLR on heterozygous genomes

  #1 opened 5 years ago by dcopetti
  2

• compatibility with HiFi CCS PacBio reads

  #17 opened 4 years ago by dabitz
  0

• Set coverage to use all

  #7 opened 5 years ago by mbhall88
  3

• Small discrepancies in docs

  #8 opened 5 years ago by mbhall88
  0

• Use preexisting contig assembly instead of minia

  #9 opened 5 years ago by mason-linscott
  2

• make clean required before make

  #10 opened 5 years ago by jelber2
  0

• Possible to lower memory usage for haslr_assemble

  #11 opened 5 years ago by jelber2
  1

• Using haslr to scaffold a pre-assembled assembly

  #12 opened 5 years ago by uncleflybfchen
  0

• Using CCS/HiFi PacBio reads

  #6 opened 5 years ago by mbhall88
  6

• minimum coverage requirements?

  #2 opened 5 years ago by mjmillerlab
  5

• Arranging files with paired end short-reads

  #3 opened 5 years ago by andreaswallberg
  2