wikipathways/pathway-figure-ocr

Issues

• please include the original gene names as comment in the GPML

  #86 opened a year ago by egonw
  0

• Additional content extraction and annotations from pathway figures

  #16 opened 5 years ago by AlexanderPico
  28

• Implement PFOCR-based results annotation in BTE

  #24 opened 4 years ago by AlexanderPico
  2

• Produce monthly WP JSON for BTE

  #23 opened 4 years ago by AlexanderPico
  2

• Cohort selection figures and tables

  #38 opened 3 years ago by AlexanderPico
  0

• Utilize the hierarchical structure of pathway content

  #22 opened 4 years ago by AlexanderPico
  2

• Identify PTMs

  #9 opened 5 years ago by ariutta
  0

• Update of pathway figure content and annotations

  #21 opened 3 years ago by AlexanderPico
  2

• Upgrade of pathway figure collection, processing and deposition pipeline

  #20 opened 4 years ago by AlexanderPico
  2

• Trouble reading pfocr_chemicals.tsv

  #37 opened 3 years ago by AlexanderPico
  0

• MSigDb unique gene count

  #27 opened 3 years ago by AlexanderPico
  6

• Potential improvements to Jupyter and other infra

  #33 opened 3 years ago by ariutta
  0

• New gene counts

  #26 opened 3 years ago by AlexanderPico
  2

• Intersection of CMap and PFOCR extracted chemicals

  #25 opened 3 years ago by AlexanderPico
  6

• Suggested improvement: Show full publication title when hovering over "paper title" column in table.

  #29 opened 3 years ago by khanspers
  1

• Incorrect link in Shiny

  #28 opened 3 years ago by khanspers
  0

• Continue automation of PFOCR

  #17 opened 4 years ago by AlexanderPico
  8

• Support expansion and filtering operations in BTE through the PFOCR API with expanded concept extraction

  #15 opened 4 years ago by AlexanderPico
  5

• Shiny app: Fix column widths

  #19 opened 4 years ago by AlexanderPico
  0

• Shiny app: Mouse-over values

  #18 opened 4 years ago by AlexanderPico
  0

• Provide PFOCR data for external ranking and sorting

  #13 opened 5 years ago by AlexanderPico
  4

• Establish a BioThings API for access to PFOCR data

  #12 opened 5 years ago by AlexanderPico
  31

• Establish infrastructure to automate the PFOCR pipeline

  #14 opened 5 years ago by AlexanderPico
  4

• Normalize entities from beta release of PFOCR data

  #11 opened 5 years ago by AlexanderPico
  1

• Review article on pathway analysis methods

  #10 opened 5 years ago by AlexanderPico
  0

• Paper on automated concept annotation for biomedical full text articles

  #8 opened 5 years ago by ariutta
  0

• Use updated homoglyphs package

  #7 opened 6 years ago by ariutta
  0

• please add a README

  #6 opened 6 years ago by egonw
  1

• matches missing from figures__xrefs view

  #5 opened 7 years ago by AlexanderPico
  6

• batches table

  #1 opened 7 years ago by AlexanderPico
  0

• Expand on numeric ranges

  #4 opened 7 years ago by AlexanderPico
  2

• Add lexicon source column to figures__xrefs

  #2 opened 7 years ago by AlexanderPico
  0

• Add new_to_wp column to figures__xrefs

  #3 opened 7 years ago by AlexanderPico
  0