xiaoli-dong/metaerg

Issues

• No content in output html reports?

  #17 opened 5 years ago by Anto007
  9

• Error on the docker run

  #52 opened a year ago by vebaev
  0

• Unknown option -d in output_reports.pl

  #49 opened 3 years ago by dinhe878
  1

• Output_reports.pl - Time::Piece not working, resulting in error?

  #44 opened 4 years ago by etod5987
  1

• unable to open database file at /NGStools/metaerg/bin/output_reports.pl line 58

  #51 opened 2 years ago by Hema9798
  0

• Error when creating data/all.gff file

  #24 opened 5 years ago by anttonalberdi
  0

• Error in the rRNAFinder.pl step

  #43 opened 4 years ago by etod5987
  3

• Update the docker image in docker hub

  #50 opened 3 years ago by gromain
  0

• Merging output files for multiple samples?

  #40 opened 3 years ago by sd784
  0

• Diamond not running from docker

  #1 opened 5 years ago by Anuravi123
  33

• Downloading pre-built databases halted

  #48 opened 3 years ago by EmmettPeng
  0

• Can't call method "length" on an undefined value at /home/metaerg/bin/output_reports.pl line 316.

  #35 opened 4 years ago by roshanzhc
  3

• MetaErg with default options does not running

  #47 opened 3 years ago by PavelKiryanov
  0

• Cannot download database from Calgary site

  #45 opened 4 years ago by sipesk
  2

• `setup_db.pl` not finding the SILVA database

  #46 opened 4 years ago by MatteoSchiavinato
  1

• # Failing to download go_daily-termdb.rdf-xml.gz

  #42 opened 4 years ago by liuruia
  0

• setup_db.pl failing to download SSU data

  #41 opened 4 years ago by hans-vg
  0

• Update Ubuntu version in Dockerfile

  #39 opened 4 years ago by niccw
  0

• MinPath.py error

  #37 opened 4 years ago by ndmrsn
  2

• vestigial -d option in pipeline causing error

  #5 opened 5 years ago by ablacutt
  12

• Error in rRNAFinder.pl

  #36 opened 4 years ago by michoug
  0

• Running Docker impossible

  #32 opened 4 years ago by Arzhura
  1

• error slice bounds out of range [:105] with capacity 27

  #34 opened 4 years ago by Nomansagheer20
  0

• Annotation of metatranscriptome assembly

  #33 opened 4 years ago by Anto007
  0

• abundance calculation

  #31 opened 4 years ago by mbcarbonetto
  0

• Is it possible to use metaerg with databases other than the ones included?

  #30 opened 4 years ago by anupamasharan
  0

• How is the abundance calculated for each functional profile?

  #23 opened 5 years ago by aimirza
  5

• Run metaerg on existing gene prediction

  #29 opened 4 years ago by johanneswerner
  0

• Error of run using docker

  #28 opened 5 years ago by YT123-coder
  0

• issues with KEGG annotations and KO mapping

  #26 opened 5 years ago by camillaln
  6

• .json files aren't JSON

  #27 opened 5 years ago by Finesim97
  0

• Current downloadable reference archive is missing the hmm/rna folder

  #25 opened 5 years ago by Finesim97
  0

• unable to open database file

  #12 opened 5 years ago by PatoUru
  9

• more than --cpus [N] used when calling metaerg.pl

  #22 opened 5 years ago by chassenr
  1

• can't load critical perl modules - MetaErg on KBase?

  #20 opened 5 years ago by smurdock-UVic
  1

• Normalization step

  #15 opened 5 years ago by aimirza
  3

• Best practices when rerunning after job fails

  #18 opened 5 years ago by aimirza
  5

• DBD::SQLite::st execute failed: disk I/O error

  #19 opened 5 years ago by aimirza
  1

• Minimal info needed in depth file

  #16 opened 5 years ago by aimirza
  4

• master.tsv.txt has no entries for kegg and metacyc pathway

  #11 opened 5 years ago by johanneswerner
  7

• master.tsv

  #4 opened 5 years ago by camillaln
  1

• Install via conda

  #13 opened 5 years ago by aimirza
  1

• Bio::Root::Exception: mdepth_cols does not exist

  #10 opened 5 years ago by johanneswerner
  5

• utility scripts: "Inappropriate ioctl for device" and "unbinned" bin IDs

  #8 opened 5 years ago by CaitlinCasar
  0

• panic: runtime error: slice bounds out of range

  #7 opened 5 years ago by CaitlinCasar
  3

• Cannot install SWISS::Entry; and SWISS::KW; perl modules

  #6 opened 5 years ago by slambrechts
  1

• Error in docker docs ? Also perl error ?

  #2 opened 5 years ago by colindaven
  2