AllenInstitute/ipfx

Issues

• remove pandas dependency freeze

  #545 opened 2 months ago by tmchartrand
  1

• Can't pip install (dependency conflicts with AllenSDK?)

  #550 opened 2 months ago by tmchartrand
  3

• A question regarding data processing in the article "Consistent cross-modal identification of cortical neurons with coupled autoencoders."

  #562 opened 3 months ago by beilouer
  0

• Cannot build on Python 3.12

  #561 opened 4 months ago by patrick-nicodemus
  0

• can't install ipfx

  #557 opened a year ago by sayakaminegishi
  3

• [note] [dev] Removal of set_container_sources() method in IPFX 2.0.0

  #560 opened a year ago by sheriferson
  0

• pip install ipfx fails on macOS with M1 arm64 cpu (apple silicon)

  #558 opened a year ago by cudmore
  1

• Fail using the create_ephys_data_set to open nwb file in the patch-seq ephys dataset.

  #555 opened 2 years ago by melancholy12
  3

• Bypass bessel filter for Chirp sweeps sampled at 12.5K

  #546 opened 2 years ago by ru57y34nn
  5

• Discussion related to #542

  #543 opened 3 years ago by t-b
  4

• Reconfigure spike time processing module creation to match NWB best practice

  #549 opened 2 years ago by tmchartrand
  0

• unequal number of datapoints in NWB conversion

  #473 opened 4 years ago by ozsat
  2

• Update asset metadata for older exported NWBs at DANDI

  #548 opened 2 years ago by tmchartrand
  0

• Fix Truncated Pulse Error

  #485 opened 2 years ago by ozsat
  1

• IVSCC pipeline sweep extraction crashing with TypeError at get_nwb_version()

  #537 opened 2 years ago by ru57y34nn
  2

• Correctly infer stimulus/experiment epochs from traces with Nan values

  #508 opened 2 years ago by wbwakeman
  30

• Pre- and Post-stimulus baselines should be compared to target voltage

  #533 opened 3 years ago by ru57y34nn
  3

• Update metadata embedding code for cell IDs etc

  #547 opened 2 years ago by tmchartrand
  0

• Failed and dropped sweeps are being used in Feature Extraction

  #516 opened 2 years ago by ru57y34nn
  9

• script_utils.filter_results should not return None

  #544 opened 2 years ago by gouwens
  0

• Cell attached spontaneous firing feature extraction

  #541 opened 3 years ago by ru57y34nn
  6

• Feature extraction code for analysis in Gouwens, Sorensen, et al. - Cell, 2020

  #536 opened 3 years ago by gonzalobenegas
  3

• Adapt pipeline processing for cells with multiple autobias target voltages

  #535 opened 3 years ago by ru57y34nn
  0

• null stimulus duration in QC passed sweeps

  #525 opened 3 years ago by tmchartrand
  7

• Large number of cells missing long square features

  #469 opened 3 years ago by tmchartrand
  7

• Cells failing QC due to "electrode_0_pa missing value"

  #509 opened 4 years ago by ru57y34nn
  13

• issue with run_feature_vector_extraction

  #521 opened 3 years ago by hongruhu
  13

• extract_electrde_0 should check pipette resistance before

  #513 opened 3 years ago by ru57y34nn
  2

• Read epochs info from nwb2 files

  #518 opened 4 years ago by sgratiy
  3

• IndexError: Cannot find ('EXTPCllATT',)

  #515 opened 4 years ago by sgratiy
  1

• Triage ipfx issues

  #517 opened 4 years ago by wbwakeman
  1

• Sweeps that fail qc are incorrectly recorded in LIMS with the state "auto passed"

  #507 opened 4 years ago by wbwakeman
  2

• add ability to set specific sweep checks as optional

  #499 opened 4 years ago by wbwakeman
  2

• nwb_to_pdf fails with MIES-generated NWB2 files

  #512 opened 4 years ago by tmchartrand
  0

• Release ipfx

  #502 opened 4 years ago by wbwakeman
  0

• ipfx should handle sweeps with missing stimulus amplitudes

  #498 opened 4 years ago by wbwakeman
  2

• Memory leak due to LRU cache in method of EphysNWBData

  #495 opened 4 years ago by gouwens
  4

• Remove x_to_nwb conversion functionality from the repo

  #492 opened 4 years ago by sgratiy
  1

• Memory leak when loading NWB2 files with default options

  #494 opened 4 years ago by gouwens
  1

• Update ipfx bamboo builds for new server

  #487 opened 4 years ago by wbwakeman
  1

• Fix nightly build failure

  #488 opened 4 years ago by sgratiy
  0

• Deploy ipfx

  #484 opened 4 years ago by wbwakeman
  0

• save feature_states in output

  #470 opened 4 years ago by tmchartrand
  1

• citation?

  #489 opened 4 years ago by bendichter
  2

• Implement fix on LIMS strategy to get correct ontology

  #476 opened 4 years ago by pickles-bread-and-butter
  1

• running extract_data_set_features on some PatchSeq datasets fails

  #479 opened 4 years ago by danielsf
  1

• Deploy ipfx

  #477 opened 4 years ago by wbwakeman
  0

• Update ipfx pynwb requirement and remove hdmf requirement

  #471 opened 4 years ago by wbwakeman
  1

• Document feature extraction graceful degradation

  #472 opened 4 years ago by wbwakeman
  0

• ImportError: cannot import name 'MultiContainerInterface' from 'hdmf.container'

  #468 opened 4 years ago by LibertyW
  2