AntonioGPS

AntonioGPS's Stars

• microsoft/c9-python-getting-started

  Sample code for Channel 9 Python for Beginners course

  Language:Jupyter Notebook7.8k553262.2k

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++2k51529335

• mikolmogorov/Flye

  De novo assembler for single molecule sequencing reads using repeat graphs

  Language:C79730701169

• COMBINE-lab/salmon

  🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

  Language:C++78038839164

• eggnogdb/eggnog-mapper

  Fast genome-wide functional annotation through orthology assignment

  Language:Python57719512106

• Maproom/qmapshack

  Consumer grade GIS software

  Language:C++2981647264

• PacificBiosciences/FALCON

  FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries

  Language:Python20554586102

• egeulgen/pathfindR

  pathfindR: Enrichment Analysis Utilizing Active Subnetworks

  Language:R184614126

• marbl/SALSA

  SALSA: A tool to scaffold long read assemblies with Hi-C data

  Language:Python1822016547

• imgag/ngs-bits

  Short-read sequencing tools

  Language:C++1501630232

• ThatcherC/Terrain2STL

  A web-based service that converts publicly available HGT files to useful STL files.

  Language:C147302139

• bigomics/omicsplayground

  Visual self-service analytics platform for big omics data.

  Language:R120466635

• zhxiaokang/RASflow

  RNA-Seq analysis workflow

  Language:HTML10463859

• wurmlab/flo

  Same species annotation lift over pipeline.

  Language:Ruby96164128

• xie186/ViewBS

  ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data

  Language:Perl8575527

• artic-network/rampart

  Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

  Language:JavaScript79168533

• shendurelab/LACHESIS

  The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)

  Language:C++7696132

• phasegenomics/FALCON-Phase

  FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds

  Language:C74106017

• tanghaibao/allhic

  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes

  Language:Jupyter Notebook594013

• nnngrach/AnyGIS_server

  Swift: Main server-side application of AnyGIS maps project

  Language:Swift50259

• nnngrach/strava_auto_auth

  Node.JS: Script for scraping Strava authorization cookies

  Language:JavaScript30486

• DeplanckeLab/BRB-seqTools

  Suite of tools for processing BRB-seq data

  Language:Java26599

• jengelmann/FastqPuri

  fastq quality assessment and filtering tool

  Language:C1841411

• mh11/gnx-tools

  genome basic statistics tool (e.g. n50, n10, ng50,...)

  Language:Java14401

• xiaofengsong/CircAST

  CircAST is a computational tool for circular RNA full-length assembly and quantification using RNA-Seq data.

  Language:Python9348

• urmi-21/PLncPRO

  A machine learning model for the prediction of lncRNAs (Singh et. al NAR 2017)

  Language:Python8225

• phasegenomics/update_assembly

  Generate two phased Juicebox .assembly files from one master .assembly for FALCON-Phase

  Language:Python3502

• PMSG80/enigma2

  my share

  Language:Redcode2

• AntonioGPS/MethylDackel

  A (mostly) universal methylation extractor for BS-seq experiments.

  Language:C1100

• AntonioGPS/RASflow

  RNA-Seq analysis workflow

  Language:HTML1100