Clearmind777

Clearmind777's Stars

• practical-tutorials/project-based-learning

  Curated list of project-based tutorials

  211k3.1k18727.5k

• ddbourgin/numpy-ml

  Machine learning, in numpy

  Language:Python15.8k461503.8k

• numba/numba

  NumPy aware dynamic Python compiler using LLVM

  Language:Python10.1k1985.3k1.1k

• Lordog/dive-into-llms

  《动手学大模型Dive into LLMs》系列编程实践教程

  4k259352

• cs230-stanford/cs230-code-examples

  Code examples in pyTorch and Tensorflow for CS230

  Language:Python4k6419998

• betaflight/betaflight-configurator

  Cross platform configuration tool for the Betaflight firmware

  Language:JavaScript2.6k1581.4k923

• apptainer/singularity

  Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.

  Language:Go2.5k883.3k426

• EdgeTX/edgetx

  EdgeTX is the cutting edge open source firmware for your R/C radio

  Language:C1.7k642.7k350

• lh3/bwa

  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

  Language:C1.6k107309555

• ncbi/sra-tools

  SRA Tools

  Language:C1.2k56866251

• arq5x/bedtools2

  bedtools - the swiss army knife for genome arithmetic

  Language:C94758837287

• MareesAT/GWA_tutorial

  A comprehensive tutorial about GWAS and PRS

  8592824333

• trinityrnaseq/trinityrnaseq

  Trinity RNA-Seq de novo transcriptome assembly

  Language:Perl841571.4k320

• sylabs/singularity

  SingularityCE is the Community Edition of Singularity, an open source container platform designed to be simple, fast, and secure.

  Language:Go79019798100

• openwdl/wdl

  Workflow Description Language - Specification and Implementations

  78588304307

• nextflow-io/awesome-nextflow

  A curated list of nextflow based pipelines

  57633289

• Starlitnightly/omicverse

  A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

  Language:Jupyter Notebook530519365

• FelixKrueger/TrimGalore

  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

  Language:Perl48221178150

• Nealelab/UK_Biobank_GWAS

  Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

  Language:Python3524042107

• nextflow-io/patterns

  A curated collection of Nextflow implementation patterns

  Language:Nextflow336252070

• Dfam-consortium/RepeatMasker

  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

  Language:Perl238626650

• Dfam-consortium/RepeatModeler

  De-Novo Repeat Discovery Tool

  Language:Perl198824922

• WittonBell/typoraCracker

  A patch and keygen tools for typora.

  Language:Python19220258

• Anvil/bash-argsparse

  An high level argument parsing library for bash

  Language:Shell1858716

• bergmanlab/mcclintock

  Meta-pipeline to identify transposable element insertions using next generation sequencing data

  Language:Python94168430

• Dfam-consortium/TETools

  Dfam Transposable Element Tools Docker container.

  Language:Perl8644217

• DerKevinRiehl/TransposonUltimate

  TransposonUltimate - a holistic set of tools for transposon identification

  826165

• clemgoub/dnaPipeTE

  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).

  Language:Dockerfile5258611

• FemeniasM/ExplorATEproject

  R package to explore active transposable elements with RNA-seq data

  Language:HTML18293

• lalor/emcli

  A email client in terminal

  Language:Python143111