NataliHB

NataliHB's Stars

• cxli233/Online_R_learning

  Online R learning for applied statistics

  537183105

• crazyhottommy/bioinformatics-one-liners

  Bioinformatics one liners from Ming Tang

  459190128

• wwood/CoverM

  Read coverage calculator for metagenomics

  Language:Rust3131116731

• nf-core/nanoseq

  Nanopore demultiplexing, QC and alignment pipeline

  Language:Nextflow1861408083

• AnantharamanLab/METABOLIC

  A scalable high-throughput metabolic and biogeochemical functional trait profiler

  Language:Perl183418846

• wwood/singlem

  Novelty-inclusive microbial community profiling of shotgun metagenomes

  Language:Python137913718

• fwhelan/coinfinder

  A tool for the identification of coincident (associating and dissociating) genes in pangenomes.

  Language:C++9777710

• MaestSi/MetONTIIME

  A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework

  Language:Nextflow85511017

• geronimp/enrichM

  Toolbox for comparative genomics of MAGs

  Language:Python8276822

• AstrobioMike/bit

  Bioinformatics Tools

  Language:Python8162612

• BradyAJohnston/plasmapR

  Creating plasmid maps inside ggplot.

  Language:R81497

• AnantharamanLab/ViWrap

  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses

  Language:Python6845515

• AnantharamanLab/vRhyme

  Binning Virus Genomes from Metagenomes

  Language:Python5933710

• raw-lab/MetaCerberus

  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focus of shotgun metaomics data

  Language:HTML535277

• SvetlanaUP/Microbiome-conferences-c

  This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.

  48705

• metaGmetapop/metapop

  A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations

  Language:R3913510

• endixk/ezaai

  EzAAI - High Throughput Prokaryotic AAI Calculator

  Language:Java362204

• guyleonard/genomics_adventure

  Workshop on Genomics - Genomics Adventure

  Language:Shell34469

• spxuw/DKI

  Language:R3421111

• EnvGen/metagenomics-workshop

  Metagenomics Workshop

  Language:Python2891336

• jensenlab/BacterAI

  Language:HTML23338

• EBI-Metagenomics/MGnifyR

  R package for searching, downloading and analysis of EBI MGnify metagenomics data

  Language:R1961810

• jokergoo/ComplexHeatmap_v2_paper_code

  Language:R18203

• DieStok/Basic-Machine-Learning-for-Bioinformatics

  ML course materials for bioinformatics students following the Basic Machine Learning for Bioinformatics course at Utrecht University. Course created and taught by Dieter Stoker.

  Language:Jupyter Notebook6101

• chan-csu/SPAM-DFBA

  Formal repository for "Microbial Interactions from a New Perspective: Reinforcement Learning Reveals New Insights into Microbiome Evolution"

  Language:HTML5204

• AnantharamanLab/annoVIBRANT

  Annotation-only wrapper for VIBRANT

  Language:Python30

• DamienFinn/MD

  Metagenomic diversity index calculator and example .faa contig data.

  Language:Python3101

• xiaoli-dong/metagenomics_crash_course

  Language:Perl3103

• Fabbiologia/Coralline-algae-habitats

  Language:R2100

• mlangwig/phylogenetics-class

  A course in the theory and practice of phylogenetic inference from DNA sequence data

  Language:HTML2000