NataliHB

NataliHB's Stars

• steineggerlab/foldseek

  Foldseek enables fast and sensitive comparisons of large structure sets.

  Language:C85318355103

• moshi4/pyCirclize

  Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

  Language:Python789104550

• amkozlov/raxml-ng

  RAxML Next Generation: faster, easier-to-use and more flexible

  Language:C++4032018563

• chklovski/CheckM2

  Assessing the quality of metagenome-derived genome bins using machine learning

  Language:Scilab183811221

• pha4ge/hAMRonization

  Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

  Language:Python144195730

• steineggerlab/foldmason

  Multiple Protein Structure Alignment at Scale with FoldMason

  Language:C14451214

• steineggerlab/Metabuli

  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

  Language:C++12363710

• EMBL-PKU/BASALT

  Language:Python9326114

• PacificBiosciences/HiFi-16S-workflow

  Nextflow pipeline to analyze PacBio HiFi full-length 16S data

  Language:Nextflow6585617

• linxingchen/cobra

  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

  Language:Python6223910

• vinuesa/get_phylomarkers

  A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches

  Language:Perl544178

• geronimp/graftM

  GraftM - Rapid community profiles from metagenomes

  Language:Python44510416

• AroneyS/binchicken

  Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly

  Language:Python35372

• ukaraoz/microtrait

  Language:Shell294116

• BigDataBiology/argNorm

  ARG normalization by mapping to the ARO ontology.

  Language:Python28275

• gaarangoa/deeparg

  A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deepARG-LS.

  Language:Python281103

• Sydney-Informatics-Hub/Shotgun-Metagenomics-Analysis

  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more

  Language:Shell266168

• bacpop/CELEBRIMBOR

  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs

  Language:Python22040

• genotoul-bioinfo/Binette

  A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.

  Language:Python223111

• JLSteenwyk/BioKIT

  a versatile toolkit for processing and analyzing diverse types of sequence data

  Language:Python213210

• ProbstLab/uBin

  Language:TypeScript19211

• Arcadia-Science/noveltree

  NovelTree is a highly parallelized and computationally efficient phylogenomic workflow that infers gene families, gene family trees, species trees, and gene family evolutionary history.

  Language:Nextflow186403

• Kalan-Lab/lsaBGC-Pan

  lsaBGC - suite for pan-BGC-omics analysis

  Language:Python18292

• statdivlab/paramedic

  Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations

  Language:R143151

• statdivlab/happi

  A Hierarchical Approach to Pangenomics Inference

  Language:R114294

• bacpop/cgt

  Calculate sensible core gene thresholds for metagenomic data

  Language:Rust4200

• NeLLi-team/symcla

  symcla: symbiont classifier

  Language:Python4200

• MEDEAlab/WhereDoGGo

  A pipeline for prokaryotic phylogenomics. Place your new genomes on the tree of life.

  Language:Python31

• ndombrowski/NanoClass2

  Language:Python2100

• linxingchen/PlasmidHunter

  This tool predicts plasmid sequences from genomic and metagenomic assemblies using machine learning.

  Language:Python1100