WillJackson94

WillJackson94's Stars

• deepfakes/faceswap

  Deepfakes Software For All

  Language:Python52.8k1.5k86813.3k

• dmlc/xgboost

  Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Dask, Flink and DataFlow

  Language:C++26.5k9105.3k8.7k

• mnielsen/neural-networks-and-deep-learning

  Code samples for my book "Neural Networks and Deep Learning"

  Language:Python16.3k1.1k06.6k

• google/deepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Language:Python3.3k155856731

• PyTables/PyTables

  A Python package to manage extremely large amounts of data

  Language:Python1.3k63738276

• arq5x/bedtools2

  bedtools - the swiss army knife for genome arithmetic

  Language:C94758837287

• YuLab-SMU/ggtree

  :christmas_tree:Visualization and annotation of phylogenetic trees

  Language:R85238506173

• cBioPortal/cbioportal

  cBioPortal for Cancer Genomics

  Language:Java692546.2k565

• KlugerLab/FIt-SNE

  Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

  Language:C++5943675107

• Ensembl/ensembl-vep

  The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

  Language:Perl459291.1k154

• seqan/seqan3

  The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

  Language:C++4172577182

• Illumina/manta

  Structural variant and indel caller for mapped sequencing data

  Language:C++41641302153

• jmzeng1314/tcga_example

  Language:HTML277243227

• kharchenkolab/pagoda2

  R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

  Language:JavaScript2181611647

• Irrationone/cellassign

  Automated, probabilistic assignment of cell types in scRNA-seq data

  Language:R199138983

• bioinform/neusomatic

  NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection

  Language:Python169125250

• griffithlab/pVACtools

  Language:R1471763261

• broadinstitute/wot

  A software package for analyzing snapshots of developmental processes

  Language:Jupyter Notebook142128235

• opencb/cellbase

  High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/

  Language:Java922942153

• gatk-workflows/gatk4-somatic-snvs-indels

  This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.

  Language:wdl7617043

• mskcc/mutation-signatures

  Create mutation signatures from MAF's, and decompose them into Stratton signatures

  Language:R6078330

• whuJackie/ghelper

  谷歌上网助手手动安装包

  Language:CSS541027

• TRON-Bioinformatics/seq2HLA

  In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie index comprising all HLA alleles and outputs the most likely HLA class I and class II genotypes (in 4 digit resolution), a p-value for each call, and the expression of each class.

  Language:Python483177

• felixfan/PyHLA

  Python for HLA analysis: summary, association analysis, zygosity test and interaction test

  Language:Python3271011

• jason-weirather/CIBERSORT

  A shell to facilitate loading / running CIBERSORT software in structured environments

  Language:Python26317

• BaderLab/singleLiverCells

  Scripts for processing single liver cells RNA-Seq 10X Genomics Data

  Language:R2315110

• mnielLab/netTCR

  predicting peptide and TCR interaction

  Language:Python20745

• liyangbit/awesome-python-sources

  include awesome python sources

  6305

• linnarsson-lab/DG_paper_public

  Matlab code

  Language:MATLAB5311

• XuegongLab/HCA-reproducibility

  A case study on the detailed reproducibility of a human cell atlas project

  Language:Jupyter Notebook3103