amirfeizi

amirfeizi's Stars

• dair-ai/Prompt-Engineering-Guide

  🐙 Guides, papers, lecture, notebooks and resources for prompt engineering

  Language:MDX51.3k5632075k

• williamfiset/Algorithms

  A collection of algorithms and data structures

  Language:Java17.5k4261784.4k

• google-deepmind/alphafold

  Open source code for AlphaFold 2.

  Language:Python13k2288672.3k

• openai/DALL-E

  PyTorch package for the discrete VAE used for DALL·E.

  Language:Python10.8k229901.9k

• artidoro/qlora

  QLoRA: Efficient Finetuning of Quantized LLMs

  Language:Jupyter Notebook10.1k85249826

• ossu/bioinformatics

  :microscope: Path to a free self-taught education in Bioinformatics!

  5.6k36924940

• varunshenoy/GraphGPT

  Extrapolating knowledge graphs from unstructured text using GPT-3 🕵️‍♂️

  Language:JavaScript4.4k5629391

• lancedb/lance

  Modern columnar data format for ML and LLMs implemented in Rust. Convert from parquet in 2 lines of code for 100x faster random access, vector index, and data versioning. Compatible with Pandas, DuckDB, Polars, Pyarrow, and PyTorch with more integrations coming..

  Language:Rust4.1k431.1k237

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.2k17111621

• nextflow-io/nextflow

  A DSL for data-driven computational pipelines

  Language:Groovy2.8k893.4k643

• bioconda/bioconda-recipes

  Conda recipes for the bioconda channel.

  Language:Shell1.7k961.9k3.3k

• DeepGraphLearning/KnowledgeGraphEmbedding

  Language:Python1.3k2554267

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.3k261k366

• retypeapp/retype

  Retype is an ✨ ultra-high-performance✨ static site generator that builds a website based on simple text files.

  Language:JavaScript1.1k9389207

• hail-is/hail

  Cloud-native genomic dataframes and batch computing

  Language:Python985552.4k247

• MichelNivard/gptstudio

  GPT RStudio addins that enable GPT assisted coding, writing & analysis

  Language:R91119119110

• kundajelab/deeplift

  Public facing deeplift repo

  Language:Python8393789164

• ropensci/rtweet

  🐦 R client for interacting with Twitter's [stream and REST] APIs

  Language:R78638604201

• ferru97/PyPaperBot

  PyPaperBot is a Python tool for downloading scientific papers using Google Scholar, Crossref, SciHub, and SciDB.

  Language:Python425103879

• kalininalab/alphafold_non_docker

  AlphaFold2 non-docker setup

  Language:Shell3491070121

• BayraktarLab/cell2location

  Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

  Language:Python327724858

• jkeirstead/scholar

  Analyse citation data from Google Scholar

  Language:R317258984

• immunomind/immunarch

  🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

  Language:R3131430565

• Google-Health/records-research

  Language:Python219121566

• ropensci/rentrez

  talk with NCBI entrez using R

  Language:R1971418038

• Gaius-Augustus/GALBA

  GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

  Language:Perl13710344

• ninglab/CTKG

  The Clinical Trials Knowledge Graph

  Language:Jupyter Notebook532416

• Accenture/Cymple

  Cymple - a productivity tool for creating Cypher queries in Python

  Language:Python50755

• theislab/tissue_tensorflow

  Language:Python8300

• minghuilab/PremPS

  Language:Rich Text Format7225