anna-alemany

anna-alemany's Stars

• hakimel/reveal.js

  The HTML Presentation Framework

  Language:JavaScript67.6k1.7k2.4k16.6k

• freebayes/freebayes

  Bayesian haplotype-based genetic polymorphism discovery and genotyping.

  Language:C++76646685262

• tanghaibao/goatools

  Python library to handle Gene Ontology (GO) terms

  Language:Python76423210211

• hemberg-lab/scRNA.seq.course

  Analysis of single cell RNA-seq data course

  Language:TeX6706261360

• pachterlab/BI-BE-CS-183-2023

  Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

  Language:Jupyter Notebook3969362

• FelixKrueger/Bismark

  A tool to map bisulfite converted sequence reads and determine cytosine methylation states

  Language:HTML37915632101

• arq5x/poretools

  a toolkit for working with Oxford nanopore data

  Language:Jupyter Notebook2393715190

• alimanfoo/pysamstats

  A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

  Language:Python1891210043

• gnuplot/gnuplot-old

  Unofficial mirror of gnuplot's CVS repository. It should be unmodified source, but this copy has been created with buggy "git cvsimport" and has serious issues, you at your own risk

  Language:C13917056

• ChristopherWilks/megadepth

  BigWig and BAM utilities

  Language:C++914159

• AllonMKlein/scrublet

  Detect doublets in single-cell RNA-seq data

  Language:Jupyter Notebook8514026

• synthego-open/ice

  Synthego ICE - Inference of CRISPR Editing software

  Language:Python65131930

• emdann/milopy

  Python implementation of Milo for differential abundance testing on KNN graph

  Language:Jupyter Notebook602247

• telatin/bamtocov

  🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

  Language:Nim593126

• dgrun/RaceID3_StemID2_package

  Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and StemID2 method including novel functionalities and performance improvements compared to the previous RaceID3/StemID2 version in the RaceID3_StemID2 repository. The RaceID3_StemID2 repository will not be updated anymore in the future.

  Language:R4151011

• ShobiStassen/PARC

  Language:Jupyter Notebook4142211

• dgrun/StemID

  Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.

  Language:R398819

• jcbmarques/clusterdv

  Density valley clustering (cluserdv). Matlab implementation.

  Language:Matlab260111

• maragkakislab/samql

  SQL-like query language for the SAM/BAM file format

  Language:Go26535

• caokai1073/UnionCom

  The Software of UnionCom Algorithm

  Language:Python24444

• BIMSBbioinfo/intro2UnixandSGE

  resource for unix and SGE beginners

  Language:JavaScript227019

• BuysDB/SingleCellMultiOmics

  Tools which deal with multiple single cell measurements

  Language:Python197699

• LeidenCBC/MGC-BioSB-SingleCellAnalysis2020

  Language:HTML194013

• dgrun/RaceID3_StemID2

  Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. Please download the R package from the RaceID3_StemID2_package repository, which contains the current version as an R package. This repository will not be updated anymore.

  Language:R15346

• chlbaron/GateID

  Cell type purification by single-cell transcriptome-trained sorting

  Language:R148

• hitaandrea/MGcount

  MGcount github repository

  Language:R14289

• HeleneKretzmer/EpigeneticRegulators_MouseGastrulation

  Epigenetic regulator function through mouse gastrulation

  Language:Shell72

• HanLab-OSU/Beat

  Beat8 -The Base Editing Analysis Tool

  Language:Python43

• anna-alemany/samtools

  Tools (written in C using htslib) for manipulating next-generation sequencing data

  Language:C1100

• emdann/HexamerBias

  Random hexamer bias analysis

  Language:Python120