bebop/poly

Pileup parsing deletion with .

Koeng101 opened this issue · 4 comments

Koeng101 commented

I have the following read:

57      510     C       5       ..,,.   RD7HN
57      511     A       5       .-3TTG.-3TTG,-3ttg,-3ttg.-3TTG  JC7H:
57      512     T       5       *****   @?8J:
57      513     T       5       *****   @?8J:
57      514     G       5       *****   @?8J:
57      515     G       5       ..,,.   @?8J:

There must a better way of showing "deletion! oh no!" then this notation above. -3TTG along with * denormalizes the data, and since -3TTG will be a part of 511 (which is actually completely correct), this gets confusing.

Koeng101 commented

(This is commenting on something that could come up when we want a "pileup.AnalyzeSequence" function)

carreter commented

@Koeng101 reminder to triage this both here and in the roadmap!

Koeng101 commented

Added labels I think, also I think generally this is gonna be "sequencing result from pileup file"

github-actions commented

This issue has had no activity in the past 2 months. Marking as stale.