bebop/poly

Issues

• PDBx Parser

  #297 opened 2 years ago by TimothyStiles
  10

• PCR simulation should have circularity as an aspect of the sequence itself, not of the entire function

  #225 opened 3 years ago by Koeng101
  3

• CRISPR gRNA Design

  #230 opened 3 years ago by TimothyStiles
  10

• Default codon tables

  #247 opened 3 years ago by Koeng101
  6

• Certain tests fail on windows

  #301 opened 2 years ago by toothsy
  4

• Codon tables should have start codon statistics

  #262 opened a year ago by Koeng101
  5

• Data race causes flaky test in "clone"

  #276 opened a year ago by matiasinsaurralde
  8

• PCR simulations are wrong.

  #279 opened a year ago by Koeng101
  8

• Implement substitution matrices for alignment

  #290 opened 2 years ago by TimothyStiles
  2

• Implement Zuker and basic DNA/RNA energistics

  #293 opened 2 years ago by TimothyStiles
  0

• GbkLocationString should be in "Feature" not "Location

  #261 opened a year ago by Koeng101
  3

• Improve synthesisFixer repeat finder

  #206 opened 2 years ago by Koeng101
  0

• Promoter, terminator, non-coding parts.

  #229 opened 2 years ago by TimothyStiles
  8

• Seqhash with overhangs

  #224 opened 2 years ago by Koeng101
  2

• Methylation testing

  #216 opened 2 years ago by Koeng101
  1

• Implement Zuker, 1981 dynamic folding algorithm

  #289 opened 2 years ago by TimothyStiles
  0

• Poly does not faithfully keep label names the same

  #181 opened 2 years ago by Koeng101
  3

• Add basepairs to a sequence maintaining features in the right position

  #194 opened 2 years ago by isaacguerreir
  1

• Analyzing sequences for hairpin content, and 'fixing' sequences to remove long hairpins

  #162 opened 2 years ago by eyesmo
  0

• Go implementation of Nonrepetitive Parts Calculator

  #163 opened 2 years ago by eyesmo
  0

• Gff fails to parse on basic Gff file

  #153 opened 2 years ago by Koeng101
  4

• Implement Smith-Waterman alignment

  #291 opened 2 years ago by TimothyStiles
  1

• rebase can contain multiple references

  #278 opened 2 years ago by Koeng101
  2

• Fixing eisen bug in Golden Gate Cloning

  #241 opened 2 years ago by TimothyStiles
  2

• overhaul dev docs and workflow

  #254 opened 2 years ago by TimothyStiles
  0

• Suggestion: make the project part of Hacktoberfest

  #277 opened 2 years ago by matiasinsaurralde
  1

• create config struct for seqhash hashing.

  #263 opened 2 years ago by TimothyStiles
  3

• Make example tests run in browser

  #213 opened 3 years ago by Koeng101
  3

• Add top level doc strings for subpackages.

  #243 opened 3 years ago by TimothyStiles
  0

• Overhauling IO

  #212 opened 3 years ago by TimothyStiles
  1

• Codon optimize does not check if amino acids are in table

  #201 opened 3 years ago by Koeng101
  2

• A galaxy brain IO solution. This is the way.

  #218 opened 3 years ago by TimothyStiles
  0

• indexing existing functionality

  #217 opened 3 years ago by codercahol
  4

• Ability to generate a attributions file in BibTeX

  #197 opened 3 years ago by rkrishnasanka
  3

• Code coverage badge and statuses

  #144 opened 3 years ago by TimothyStiles
  1

• Parser overhaul

  #157 opened 3 years ago by Koeng101
  0

• Migrating to more mature CLI package.

  #172 opened 3 years ago by TimothyStiles
  2

• Remove "Codeclimate"

  #211 opened 3 years ago by Koeng101
  2

• SplitSet with more features

  #196 opened 3 years ago by isaacguerreir
  2

• Move synthesisFixer SQL to files rather than string lines for linting

  #205 opened 3 years ago by Koeng101
  1

• Synthesis fixer slow

  #199 opened 3 years ago by Koeng101
  1

• Brew installation does not work for m1 Macbook pro

  #195 opened 3 years ago by nii236
  10

• Genbank flat file parsing should be channeled

  #169 opened 3 years ago by Koeng101
  1

• The Poly RBS calculator

  #145 opened 3 years ago by Koeng101
  7

• GbkFlatGz example fails to read feature properly.

  #170 opened 4 years ago by Koeng101
  7

• Rebase commands (ParseRebase, ReadRebase, ExportRebase) are redundant

  #165 opened 4 years ago by Koeng101
  1

• Uniprot fails on error EOF on default tests

  #166 opened 4 years ago by Koeng101
  0

• Genbank features are not parsed with attribtues.

  #152 opened 4 years ago by Koeng101
  2

• Poly fails to translate features that are lowercase

  #154 opened 4 years ago by Koeng101
  1

• Ability to calculate melting temperature for non-default concentrations

  #159 opened 4 years ago by rkrishnasanka
  1