bionode/bionode-ncbi

Issues

• Dependencies error: Prototype Pollution (lodash dependencies)

  #44 opened 4 years ago by JorgeFelixc
  0

• Use progress bar on download

  #40 opened 6 years ago by Fohlen
  5

• TypeError: Cannot create property 'Run' on string ' '

  #42 opened 6 years ago by esteinig
  1

• Downloading one run download the whole Bioproject

  #41 opened 7 years ago by HadrienG
  0

• Add Blast API

  #39 opened 7 years ago by Fohlen
  2

• Output some warning to terminal when there is no output

  #38 opened 7 years ago by tiagofilipe12
  0

• geo is not searchable

  #20 opened 7 years ago by lorenzorietti
  5

• Modularize lib structure.

  #34 opened 7 years ago by Istar-Eldritch
  0

• Download the GFF file of the Cycas taitungensis mitochondrion

  #11 opened 7 years ago by sjackman
  9

• Error handling when NCBI connection is lost

  #29 opened 7 years ago by tiagofilipe12
  4

• User-friendly CLI

  #31 opened 7 years ago by bmpvieira
  0

• We need a smaller assembly from NCBI for testing

  #24 opened 7 years ago by bmpvieira
  3

• Git rid of git-lfs

  #25 opened 7 years ago by bmpvieira
  0

• download in the examples printing too much info

  #22 opened 7 years ago by tiagofilipe12
  3

• Tests are broken because of NCBI side metadata changes (again)

  #18 opened 7 years ago by bmpvieira
  2

• Unexpected error when running 'bionode'

  #9 opened 9 years ago by tseemann
  4

• command-line argument parsing error

  #6 opened 9 years ago by blahah
  3

• Get a sequence from a Genbank ID

  #3 opened 9 years ago by audy
  4

• rna_from_genomic instead of genomic.fna

  #19 opened 7 years ago by thejmazz
  0

• Implement efetch API

  #10 opened 9 years ago by bmpvieira
  0

• How to look up metadata for an SRR file

  #17 opened 9 years ago by olgabot
  1

• Uncaught, unspecified "error" event

  #13 opened 9 years ago by robsyme
  1

• Provide a user-friendly error when unable to access NCBI servers

  #8 opened 9 years ago by bmpvieira
  0

• retmax

  #4 opened 10 years ago by vid
  3

• pagination

  #2 opened 9 years ago by max-mapper
  2