error in getDeepHFScores example

[ericmalekos]

Hello I'm running into the following error using the provided example for the getDeepHFScores function

> spacer  <- "ATCGATGCTGATGCTAGATA" #20bp
> pam     <- "AGG" #3bp 
> input   <- paste0(spacer, pam) 
> results <- getDeepHFScores(input)
Error in (function (cond)  : 
  error in evaluating the argument 'x' in selecting a method for function 'query': Failed to collect lazy table.
Caused by error in `db_collect()`:
! Arguments in `...` must be used.
✖ Problematic argument:
• ..1 = Inf
ℹ Did you misspell an argument name?

I have run many of the other methods without issue - the exception being getLindelScores, which I have opened a separate issue for.

Session info:

> sessionInfo(package = NULL)
R version 4.3.2 (2023-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Pop!_OS 22.04 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0 
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8    LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

time zone: America/Los_Angeles
tzcode source: system (glibc)

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] crisprScore_1.4.0     crisprScoreData_1.4.0 ExperimentHub_2.8.1   AnnotationHub_3.8.0   BiocFileCache_2.8.0   dbplyr_2.4.0         
[7] BiocGenerics_0.46.0  

[Jfortin1]

Hi @ericmalekos, we fixed a few bugs today; could you try 1.7.2 of the devel branch to see if you have the same problems?

[Jfortin1]

Hi @ericmalekos, any updates?

[ericmalekos]

Working as of version 1.7.2