davidlougheed
Software developer at the Canadian Centre for Computational Genomics @ McGill
McGill UniversityCanada
davidlougheed's Stars
Leaflet/Leaflet
π JavaScript library for mobile-friendly interactive maps πΊπ¦
python-poetry/poetry
Python packaging and dependency management made easy
PyO3/pyo3
Rust bindings for the Python interpreter
encode/starlette
The little ASGI framework that shines. π
wojtekmaj/react-pdf
Display PDFs in your React app as easily as if they were images.
leeoniya/uPlot
π A small, fast chart for time series, lines, areas, ohlc & bars
PaulLeCam/react-leaflet
React components for Leaflet maps
PyO3/maturin
Build and publish crates with pyo3, cffi and uniffi bindings as well as rust binaries as python packages
Tinche/aiofiles
File support for asyncio
samtools/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
rust-bio/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
lh3/seqtk
Toolkit for processing sequences in FASTA/Q formats
PyO3/rust-numpy
PyO3-based Rust bindings of the NumPy C-API
broadinstitute/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
johnwalley/allotment
A React component for resizable split views
samtools/bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
Ensembl/ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
em1208/adrf
Async support for Django REST framework
ACEnglish/truvari
Structural variant toolkit for VCFs
rust-bio/rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
YYsuni/react18-json-view
JSON viewer for react18
mbhall88/rasusa
Randomly subsample sequencing reads or alignments
yangao07/abPOA
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
PacificBiosciences/trgt
Tandem repeat genotyping and visualization from PacBio HiFi data
gymrek-lab/LongTR
Tandem repeat genotyping with long reads
wdecoster/STRdust
Tandem repeat genotyping from long reads
namemcguffin/scs
fieldstations-ca/fieldstations.ca
Collection of Canadian field stations
lougheedlab/eDNA_Manual
nsbuitrago/parasail-rs
SIMD pairwise sequence alignment