davismcc/archive-scater
An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
R
Issues
- 2
Problem with runPCA function
#135 opened by lvkunz - 1
unused argument
#134 opened by ryf0810 - 2
- 1
- 5
MAGIC adaptive kernel
#106 opened by dvdijk - 1
minor comment for the documentation of normalize()
#107 opened by friedue - 1
- 14
exprs and cpm are different
#110 opened by galib36 - 2
- 1
plotHighestExprs
#113 opened by weizhiting - 5
Maximum number of cells?
#114 opened by wikiselev - 6
- 1
Add cellular detection rate by batch plot for QC
#116 opened by davismcc - 2
- 1
- 1
Add plotScater to plotQC options
#125 opened by davismcc - 1
Add capabilities for interactive plots
#126 opened by davismcc - 1
Revise vignette
#127 opened by davismcc - 2
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘plotPCA’ for signature ‘"SCESet"’
#133 opened by cguzzo - 2
plotExpression doesn't work properly
#131 opened by LTLA - 2
Number of dimensions error in calculateQCMetrics
#121 opened by samvidav - 2
plotExpression x-axis labels
#118 opened by julien-roux - 4
- 2
Reading mtx (matrix market) files?
#109 opened by vals - 1
Add RLE function/plots
#102 opened by davismcc - 2
QC metrics error
#71 opened by wikiselev - 3
- 3
Outlier detection with TPM
#74 opened by boombard - 8
getBMFeatureAnnos error
#104 opened by wikiselev - 1
exprs documentation
#101 opened by rspreafico - 1
plotQC documentation
#103 opened by rspreafico - 13
Integration with 10X data?
#82 opened by wikiselev - 3
- 3
- 1
- 4
- 5
What is the difference between built-in normalization in scater 1.0.4 and 1.2.0?
#100 opened by sozzznanie - 0
Getting more done in GitHub with ZenHub
#94 opened by davismcc - 2
NormaliseExprs with non-logged values
#99 opened by jenzopr - 2
mergeSCESet does not preserve featureControlInfo
#72 opened by LTLA - 3
Update CITATION file
#78 opened by davismcc - 1
- 4
- 3
Excess QC metrics
#73 opened by wikiselev - 1
Make `exprs` calculations more intuitive
#75 opened by LTLA - 3
could not find function "nexprs"
#68 opened by huidongchen - 1
Calculation of top percentages for feature controls
#67 opened by LTLA - 2
Calculation of top percentage for endogenous genes
#65 opened by LTLA - 4
is_exprs() not working
#64 opened by wikiselev - 2
pct_dropout is actually 100 - pct_dropout
#63 opened by kieranrcampbell