enormandeau

enormandeau's Stars

• AlexandreRouma/SDRPlusPlus

  Cross-Platform SDR Software

  Language:C++4k130868547

• google/deepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Language:Python3.2k156824718

• agersant/polaris

  Polaris is a music streaming application, designed to let you enjoy your music collection from any computer or mobile device.

  Language:Rust1.4k3012383

• brentp/mosdepth

  fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

  Language:Nim68922210100

• Gaius-Augustus/BRAKER

  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

  Language:Perl3502178979

• ncbi/pgap

  NCBI Prokaryotic Genome Annotation Pipeline

  Language:Common Workflow Language3052931190

• marbl/verkko

  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

  Language:Python2891727528

• rrwick/Filtlong

  quality filtering tool for long reads

  Language:C++280143828

• HKU-BAL/Clair3

  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

  Language:Python2331029427

• shenwei356/kmcp

  Accurate metagenomic profiling && Fast large-scale sequence/genome searching

  Language:Go18064613

• huangnengCSU/compleasm

  A genome completeness evaluation tool based on miniprot

  Language:Python17453516

• cortes-ciriano-lab/SComatic

  A tool for detecting somatic variants in single cell data

  Language:Python15936024

• wdecoster/chopper

  Language:Rust14273111

• VE3NEA/MorseRunner

  Language:Pascal13825468

• conchoecia/odp

  oxford dot plots

  Language:Python1306809

• ChaissonLab/LRA

  Long read aligner

  Language:C++1129378

• mbridak/not1mm

  Not1MM != N1MM, An amateur radio contest logger for Linux.

  Language:Python100147323

• ncbi/fcs

  Foreign Contamination Screening caller scripts and documentation

  100169413

• quinlan-lab/bedder-rs

  an API for intersections of genomic data

  Language:Rust74450

• paoloshasta/shasta

  De novo assembly from Oxford Nanopore reads.

  Language:C++7073111

• s-andrews/sradownloader

  A script to make downloading of SRA/GEO data easier

  Language:Python296229

• heche-psb/wgd

  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication

  Language:Python241400

• cduck/morse

  Morse code audio generation tool

  Language:JavaScript20239

• ryangreenj/bioinformatics_tool_recommendation

  Language:Python18112

• amkozlov/cellphy

  CellPhy: accurate and fast probabilistic inference of single-cell phylogenies

  Language:Shell16524

• itsmeludo/PhylOligo

  Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.

  Language:Python104132

• sudmantlab/loco-pipe

  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genome sequencing (lcWGS) data

  Language:Python10042

• germannp/BIST-Python-Bootcamp

  Scientific python course material for a few days.

  Language:Jupyter Notebook94314

• LaurieLecomte/SNPs_indels_SR

  Call SNPs and indels from short read data

  Language:Shell1100

• xav9536/angsd_pipeline

  lcWGS data analysis for population genomic, including parallelization and deviant SNPs filtering

  Language:Shell100