gwct

gwct's Stars

• norvig/pytudes

  Python programs, usually short, of considerable difficulty, to perfect particular skills.

  Language:Jupyter Notebook23.4k783412.4k

• exaloop/codon

  A high-performance, zero-overhead, extensible Python compiler with built-in NumPy support

  Language:Python15.6k139443532

• glamp/bashplotlib

  plotting in the terminal

  Language:Python1.9k4429142

• erikgahner/awesome-ggplot2

  A curated list of awesome ggplot2 tutorials, packages etc.

  1.6k4616175

• shenwei356/seqkit

  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

  Language:Go1.4k26458162

• pachterlab/gget

  🧬 gget enables efficient querying of genomic reference databases

  Language:Python1k87276

• RILAB/statements

  Successful Job Applications and Grants

  740721130

• brentp/mosdepth

  fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

  Language:Nim73421219100

• biod/sambamba

  Tools for working with SAM/BAM data

  Language:D58426459107

• pachterlab/ffq

  A tool to find sequencing data and metadata from public databases.

  Language:Python572125148

• aidenlab/juicer

  A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

  Language:Shell43516318185

• vanheeringen-lab/genomepy

  genes and genomes at your fingertips

  Language:Python386512838

• rpetit3/fastq-dl

  Download FASTQ files from SRA or ENA repositories.

  Language:Python31542425

• lh3/biofast

  Benchmarking programming languages/implementations for common tasks in Bioinformatics

  Language:C18218726

• ComparativeGenomicsToolkit/hal

  Hierarchical Alignment Format

  Language:C++1671122039

• mpdunne/alan

  Alignment viewer for linux terminal

  Language:Shell120447

• milkschen/leviosam2

  Fast and accurate coordinate conversion between assemblies

  Language:C++11222717

• nh13/DWGSIM

  Whole Genome Simulator for Next-Generation Sequencing

  Language:C9665738

• roblanf/sarscov2phylo

  Global phylogenies of SARS-CoV-2 sequences

  Language:Shell8691522

• JLSteenwyk/ClipKIT

  a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference

  Language:Python717205

• GreenAlgorithms/GreenAlgorithms4HPC

  Language:Python601129

• ncsa/NEAT

  NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.

  Language:Python5358315

• pblischak/HyDe

  Hybridization detection using phylogenetic invariants

  Language:Python4624314

• phyloacc/PhyloAcc

  PhyloAcc a software to detect the changes of conservation of a genomic region

  Language:C++3044312

• iramosgutierrez/phyloshapeR

  Package to plot phylogenies with custom shapes

  Language:R24200

• RILAB/mop

  Simple tool for capturing alignment regions with sufficient quality for genotyping.

  Language:Python22553

• AntonelliLab/seqcap_processor

  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics

  Language:Python2152812

• McTavishLab/physcraper

  Welcome to Physcraper’s repository! Automatic gene tree updating using the Open Tree of Life.

  Language:Python137916

• larabreithaupt/seastaR

  Source code for the R package seastaR, written by Lara Breithaupt and Mark Hibbins (see Hibbins et al. 2023). This package builds a gene tree variance-covariance matrix that can be used for downstream phylogenetic comparative analyses. Also included is a trait simulator and a function for maximum-likelihood estimation of the evolutionary rate.

  Language:R2210

• goodest-goodlab/good-utils

  Resources for the Good lab

  Language:Python1200