jhrcook
B.S. in Biology ๐ฌ and Chemistry ๐งช Ph.D. in Computational Biology ๐ป Computational Genomics Research Scientist at Vertex Pharmaceuticals ๐
Vertex PharmaceuticalsBoston, MA, USA
Pinned Repositories
advent-of-code-2023-rust
My solutions to Advent of Code 2023 (in Rust).
bayesian-data-analysis-course
My notes and work for the Bayesian Data Analysis course taught by Aki Vehtari.
ggasym
Plots three different color schemes on the top-left and bottom-right triangles and the diagonal of a symmetric matrix
mustashe
A system for stashing and loading the results of long running computations.
textrank-streamlit
A web app built with Streamlit that summarizes input text
tidy-tuesday
#TidyTuesday to practice data analysis in R
tumoroscope-pymc
Python package of the 'Tumoroscope' model implemented in PyMC.
WaterMe
An iOS application written in SwiftUI to help log when plants were last watered.
Workout-Spinner-watchapp
An Apple Watch App that randomly selects quick exercises.
jhrcook's Repositories
jhrcook/100DaysOfSwift
100 days, at least 1 hour a day, of learning the Swift programming language.
jhrcook/tidygraph-oncotree
A tidygraph of the MSK OncoTree
jhrcook/WaterMe
An iOS application written in SwiftUI to help log when plants were last watered.
jhrcook/Germinate
A small iOS app to track seed germination.
jhrcook/jhcutils
A bunch of functions that I find myself rewriting in a many scripts.
jhrcook/100DaysOfSwift2
100 days, at least 1 hour a day, of learning the Swift programming language.
jhrcook/an-introduction-to-statistical-learning
My notes on the book "An Introduction to Statistical Learning: with Applications in R."
jhrcook/CoreDataDemo2
A demonstration of using CoreData in an iOS application
jhrcook/HotNetvieweR
Read HotNet2 Results and Convert to Graph Object
jhrcook/statistical-rethinking
Notes on Statistical Rethinking: A Bayesian Course with Examples in R and Stan
jhrcook/AppleWatchCommunicationApp
An iOS app and WatOS app extension to experiment with data transfer and communication.
jhrcook/ArtificalPlantLights-v2
An LED-based, Arduino controlled, artificial plant lighting system.
jhrcook/BreatheAnimation
My attempt at mimicing the animation in the Apple Watch Breathe application using SwiftUI.
jhrcook/codekata-klondike
jhrcook/coding-resources
A collection of useful cheatsheets I have accrued
jhrcook/comutation-manuscript
Manuscript for the KRAS comutation research project.
jhrcook/demeter2-stan
The DEMETER2 model of the impact of shRNA on cell line growth in Stan.
jhrcook/docs
Online documentation for Stan language and platform
jhrcook/gallery
Gallery of ggplot2 extensions
jhrcook/hello-world-docker-action
An simple example of a GitHub action that uses a Docker container
jhrcook/hms-dac-report-1
My first DAC report.
jhrcook/plant-website
A website for my plant hobby
jhrcook/purrr
A functional programming toolkit for R
jhrcook/readgmt
Read MSigDB gene set GMT files
jhrcook/rl-playground
A Jupyter Lab for experimenting with Reinforcement Learning.
jhrcook/RPackagePlayground
My repository for trying out R packages and tutorials.
jhrcook/stan-user-guide-notes
My notes on the Stan User Guide and related Python libraries.
jhrcook/statistical-rethinking-website
A static website for my notes on "Statistical Rethinking" by Richard McElreath.
jhrcook/sunGrowLight
An Arduino library for controlling a plant grow light with real sunrise and sunset times.
jhrcook/sunMoon
arduino library to calculate moon day and sunrise and sunset times