lmrodriguezr/nonpareil

Issues

• x.adj is NaN

  #70 opened 3 months ago by fgvieira
  1

• nonpareil error on empty FASTQ file

  #71 opened 3 months ago by fgvieira
  0

• Nonpareil does not finish with small file

  #69 opened 3 months ago by fgvieira
  0

• Output model results in JSON

  #63 opened 6 months ago by fgvieira
  11

• Stats summary return a matrix of lists

  #62 opened 2 years ago by fgvieira
  1

• Suggestion on how to debug 'buffer overflow detected' error?

  #68 opened 6 months ago by jfy133
  8

• Default output prefix not very friendly

  #67 opened 6 months ago by jfy133
  3

• "std::bad_alloc" and "Cannot open the file" errors

  #64 opened 6 months ago by hkaspersen
  1

• Not reproducible results

  #48 opened 6 months ago by VGalata
  5

• nonpareil failing with too few reads

  #60 opened 6 months ago by fgvieira
  0

• Strange output filenames

  #28 opened 6 months ago by boulund
  0

• MPI version installation error

  #23 opened 6 months ago by shaman-narayanasamy
  2

• make nonpareil-mpi failed: enveomics/SeqReader.o: No such file or directory

  #21 opened 6 months ago by wwood
  2

• Input from stdin

  #29 opened 6 months ago by koopkaup
  3

• Error: "The file provided does not have the proper fastq format" or hanging when supplying gzipped files

  #66 opened 6 months ago by jfy133
  3

• Unable to locally compile 3.5.0 following instructions on website

  #65 opened 7 months ago by jfy133
  5

• Can't process gzipped fastq

  #35 opened 7 months ago by ohthetrees
  13

• Missing similarity (-S) option in usage output

  #61 opened 2 years ago by danpal96
  0

• Fatal error: Reduce the number of query reads (-X)

  #53 opened 3 years ago by dtsementzi3
  1

• Nonpareil exiting after "Evaluating consistency"

  #59 opened 2 years ago by sterrettJD
  0

• Bug in arrow placement with R packages?

  #55 opened 2 years ago by bramvandijk88
  2

• docs on the curve plot

  #58 opened 2 years ago by nick-youngblut
  0

• Data underlying figure 2 in doi 10.1128/mSystems.00039-18?

  #57 opened 2 years ago by taylorreiter
  3

• No output files

  #56 opened 2 years ago by daisykuma22
  2

• input files for Nonpareil 3

  #54 opened 3 years ago by INFINITY1993
  2

• Diversity index formula

  #27 opened 3 years ago by koopkaup
  1

• Using np to target subsampling

  #46 opened 3 years ago by andrewjmc
  1

• meaning of warning / use of -L in kmer mode

  #47 opened 3 years ago by handibles
  1

• Error in file(con, "r") : invalid 'description' argument

  #51 opened 3 years ago by ZoeHansen
  2

• number of initial reads

  #49 opened 3 years ago by lalalagartija
  1

• Re-add factor to curve?

  #52 opened 3 years ago by sjaenick
  1

• nonpareil.curve.batch - double legend?

  #43 opened 5 years ago by russejenn
  3

• Throat metagenomes

  #50 opened 3 years ago by andrewjmc
  2

• Obtaining diversity estimate

  #38 opened 5 years ago by snayfach
  3

• Paired end reads (again!)

  #41 opened 4 years ago by andrewjmc
  0

• How to set -X and -n

  #44 opened 4 years ago by Thomieh73
  2

• Systematic bias at low coverage (under 20%)

  #45 opened 4 years ago by tylerbarnum
  0

• "Picking N random sequences" forever

  #42 opened 5 years ago by nick-youngblut
  5

• extracting out "final coverage" , "actual effort" and "required effort" in numbers from .npo file

  #40 opened 5 years ago by Jigyasa3
  1

• Better visualization of Nonpareil.curve.batch for 200 samples

  #39 opened 5 years ago by Jigyasa3
  3

• Read length fatal error

  #37 opened 5 years ago by sturne29
  7

• Conda Installation Breaks R (everytime)

  #31 opened 5 years ago by Roli-Wilhelm
  2

• Nonpareil curve output file

  #34 opened 5 years ago by abenaa07
  2

• Unable to find required package ‘Nonpareil’ in the R package

  #36 opened 6 years ago by shimingt
  1

• The problem with xlim

  #33 opened 7 years ago by Valence-H
  4

• error in Nonpareil.curve

  #32 opened 7 years ago by Valence-H
  4

• Segmentation fault (core dumped)

  #30 opened 7 years ago by Freemacl
  3

• Installation of nonpareil via conda

  #24 opened 7 years ago by bebatut
  4

• Installation fails with R

  #22 opened 7 years ago by shaman-narayanasamy
  1

• Infinite loop when subsampling more reads than available with -T kmer

  #20 opened 8 years ago by lmrodriguezr
  1