mapping-commons/sssom-py

Issues

• Ordering of TSV metadata elements should follow spec

  #551 opened 5 months ago by matentzn
  0

• SSSOM py should fail hard when a mapping is not parsed in strict mode

  #550 opened 6 months ago by matentzn
  0

• Typo: therfore

  #549 opened 6 months ago by joeflack4
  0

• Warnings verbosity

  #500 opened 10 months ago by joeflack4
  4

• Make `filter_redundant_rows` resistant to the case that there is an empty `confidence` column

  #546 opened 6 months ago by matentzn
  1

• Numpy 2.0 compatibility

  #543 opened 6 months ago by bgyori
  0

• `.clean_prefix_map()`: `remove_unused_builtins` param

  #537 opened 7 months ago by joeflack4
  6

• `MappingSetDataFrame` issues when no `converter` passed

  #513 opened 9 months ago by joeflack4
  11

• Docs: Are built-in prefixes in metadata required, or recommended?

  #535 opened 7 months ago by joeflack4
  3

• `TestWrite.test_missing_entries()`

  #534 opened 7 months ago by joeflack4
  2

• Suggestion: `MappingSetDataFrame`: `.to_csv()` and `read_csv()`

  #517 opened 9 months ago by joeflack4
  5

• `poetry run sssom` fails: `sssom is not a package.`

  #528 opened 8 months ago by joeflack4
  6

• `poetry install` `arm64` architecture err

  #524 opened 8 months ago by joeflack4
  4

• Grouping issue: FHIR

  #523 opened 8 months ago by joeflack4
  0

• Error with curie parsing in `sssom parse`

  #519 opened 8 months ago by ehartley
  0

• UX: Extra entries in `curie_map` of written TSV

  #514 opened 9 months ago by joeflack4
  4

• `EntityReference` typedef: docs & validation inconsistent

  #512 opened 9 months ago by joeflack4
  3

• Suggestion: `write_table`: pass outpath alternative to `TextIO`

  #516 opened 9 months ago by joeflack4
  2

• UX: Second empty line break at bottom of file

  #515 opened 9 months ago by joeflack4
  2

• sssom invert chokes on `UnboundLocalError`

  #493 opened 9 months ago by matentzn
  4

• JSON schema validation is broken

  #434 opened 10 months ago by cthoyt
  1

• Get rid of warning "Downcasting behavior in `replace` is deprecated and will be removed in a future version."

  #491 opened a year ago by matentzn
  0

• Extended prefix map support

  #496 opened a year ago by joeflack4
  7

• Consider loosening Pandas dependency to include some 1.x versions

  #432 opened a year ago by kevinschaper
  4

• Add command to expand xrefs section in GFF3 files

  #483 opened a year ago by cmungall
  2

• Complex initialization should not be performed at time of imports

  #481 opened a year ago by cmungall
  1

• `@context` missing the type definitions in version 0.4.0

  #477 opened a year ago by anitacaron
  5

• Make explicit SSSOM-py uses zero-versioning

  #476 opened a year ago by cthoyt
  4

• Ensure prefix maps is a true bimap

  #469 opened a year ago by matentzn
  2

• 0.4 Release

  #441 opened a year ago by cthoyt
  5

• Add list of breaking changes since sssom release 0.3.31

  #461 opened a year ago by matentzn
  10

• Decouple most methods from from LinkML dataclasses, split sssom into multiple packages

  #464 opened a year ago by matentzn
  6

• Bug?: `--mapping-predicate-filter` only accepting URI, not CURIE

  #457 opened a year ago by joeflack4
  1

• Bug?: Obographs parser: metadata not utilized; getting 0 mappings

  #456 opened a year ago by joeflack4
  4

• Handle NaN in predicate modifier

  #448 opened a year ago by cthoyt
  1

• What to do when I have a list of `Mapping` objects?

  #439 opened a year ago by cthoyt
  0

• parse_sssom_table should take as an input a String, URI, or filepath

  #384 opened a year ago by matentzn
  2

• get_prefixes_used_in_metadata breaks when using URIs in the *_source columns

  #419 opened a year ago by jmillanacosta
  0

• New method: apply-chain-rules

  #365 opened 2 years ago by matentzn
  4

• `subject_id` present, but `ValueError: subject_id must be supplied`

  #410 opened a year ago by joeflack4
  3

• When running sssom-py in -C merged mode, redundant prefixes are added

  #411 opened a year ago by matentzn
  7

• Duplicate URI prefixes error during sssom parse

  #408 opened a year ago by ehartley
  1

• Make the API layer more conventional

  #376 opened 2 years ago by hrshdhgd
  1

• Replace sssom.context.external with obo.epm.json (bioregistry)

  #395 opened a year ago by matentzn
  0

• Fix all the other `^` dependencies to '>='.

  #392 opened a year ago by matentzn
  0

• Remove scipy dependency

  #393 opened a year ago by matentzn
  0

• Replace linkml dependency with linkml-runtime dependency

  #375 opened 2 years ago by cmungall
  0

• Adapters for OAEI / LogMap format

  #377 opened 2 years ago by cmungall
  3

• Installation document lacks pip install

  #373 opened 2 years ago by shawntanzk
  2

• Make pandas dependency an add-on

  #370 opened 2 years ago by cmungall
  1