mcshane's Stars
buger/goreplay
GoReplay is an open-source tool for capturing and replaying live HTTP traffic into a test environment in order to continuously test your system with real data. It can be used to increase confidence in code deployments, configuration changes and infrastructure changes.
KaTeX/KaTeX
Fast math typesetting for the web.
oz123/awesome-c
A curated list of awesome C frameworks, libraries, resources and other shiny things. Inspired by all the other awesome-... projects out there.
dat-ecosystem/dat
:floppy_disk: peer-to-peer sharing & live syncronization of files via command line
karthik/wesanderson
A Wes Anderson color palette for R
freebayes/freebayes
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
hms-dbmi/UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
vcflib/vcflib
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
phusion/holy-build-box
System for building cross-distribution Linux binaries
jtleek/genomicspapers
The Leek group guide to genomics papers
lh3/miniasm
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
jts/sga
de novo sequence assembler using string graphs
dasmoth/dalliance
Interactive web-based genome browser.
atks/vt
A tool set for short variant discovery in genetic sequence data.
stephenturner/qqman
An R package for creating Q-Q and manhattan plots from GWAS results
ryanlayer/gqt
A genotype query interface.
mcveanlab/mccortex
De novo genome assembly and multisample variant calling
lh3/bgt
Flexible genotype query among 30,000+ samples whole-genome
marbl/MHAP
MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities
stschiff/msmc
Implementation of the multiple sequential markovian coalescent
gt1/biobambam
Tools for bam file processing
varunoberoi/Howzatt
An elegant app that displays live cricket score on your mac's menu bar.
nh13/pbgzip
Parallel Block GZIP
arq5x/ggd
ekg/glia
a string to graph aligner
vibansal/hapcut
program for haplotype phasing from sequence reads and related tools
lh3/rtgeval
Wrapper for RTG's vcfeval; DEPRECATED!
lh3/sgdp-fermi
FermiKit small variant calls for public SGDP samples
lh3/sdg
EXPERIMENTAL implementation of side graph
Kingsford-Group/referee