mdziurzynski
Florence Computational Biology Group, Department of Biology, University of FlorenceFlorence, Italy
mdziurzynski's Stars
pi-hole/pi-hole
A black hole for Internet advertisements
rmcelreath/stat_rethinking_2022
Statistical Rethinking course winter 2022
reloadware/reloadium
Hot Reloading and Profiling for Python
CrossRef/rest-api-doc
Documentation for Crossref's REST API. For questions or suggestions, see https://community.crossref.org/
gamcil/clinker
Gene cluster comparison figure generator
opencobra/cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
oschwengers/bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
bioconvert/bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
cdanielmachado/carveme
CarveMe: genome-scale metabolic model reconstruction
KatyBrown/CIAlign
grimmlab/MicrobiomeBestPracticeReview
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
microbiome/OMA
Orchestrating Microbiome Analysis
HRGV/phyloFlash
phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
qiyunzhu/woltka
Woltka: a versatile meta'omic data classifier
pyhole/pyhole
A clone of the popular Pi-hole DNS ad-blocker.
Arkadiy-Garber/FeGenie
HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes
biocore/empress
A fast and scalable phylogenetic tree viewer for microbiome data analysis
soedinglab/spacedust
Discovery of conserved gene clusters in multiple genomes
metaGmetapop/metapop
A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
matthiaskoenig/sbmlutils
Python utilities for SBML
Pex2892/PETAL
PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis
SBRG/cobrame
A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
ibs-pan/foodwebviz
Python package for the visualization of food webs (trophic networks)
gem-pasteur/Macsyfinder_models
Repository containing up-to-date definitions and models for the detection of macromolecular systems with MacSyFinder.
lindenb/newicktools
Misc tools for newick format
SBRG/ecolime
Data and tools necessary to construct iJL1678b-ME, a genome-scale model of E. coli K-12 MG1655 metabolism and expression
valflanza/ResCap
Rescap Software and raw DataTables
housw/Bioinfo-Dockerfiles
Source dockerfiles for common bioinformatic tools.
SBRG/oxidizeme
OxidizeME model and notebooks
clreda/expansion-network