mdziurzynski

mdziurzynski's Stars

• pi-hole/pi-hole

  A black hole for Internet advertisements

  Language:Shell48.4k7072.8k2.7k

• rmcelreath/stat_rethinking_2022

  Statistical Rethinking course winter 2022

  Language:R4.1k22422444

• reloadware/reloadium

  Hot Reloading and Profiling for Python

  Language:Python2.8k2614156

• CrossRef/rest-api-doc

  Documentation for Crossref's REST API. For questions or suggestions, see https://community.crossref.org/

  73567546269

• gamcil/clinker

  Gene cluster comparison figure generator

  Language:Python515148968

• opencobra/cobrapy

  COBRApy is a package for constraint-based modeling of metabolic networks.

  Language:Python46037663216

• oschwengers/bakta

  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

  Language:Python4261322151

• bioconvert/bioconvert

  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

  Language:Python3642027443

• cdanielmachado/carveme

  CarveMe: genome-scale metabolic model reconstruction

  Language:Python149718551

• KatyBrown/CIAlign

  Language:Python1144258

• grimmlab/MicrobiomeBestPracticeReview

  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing

  Language:Shell1074138

• microbiome/OMA

  Orchestrating Microbiome Analysis

  Language:TeX791120943

• HRGV/phyloFlash

  phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.

  Language:Perl77412625

• qiyunzhu/woltka

  Woltka: a versatile meta'omic data classifier

  Language:Python6897724

• pyhole/pyhole

  A clone of the popular Pi-hole DNS ad-blocker.

  Language:HTML676911

• Arkadiy-Garber/FeGenie

  HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes

  Language:Python5444111

• biocore/empress

  A fast and scalable phylogenetic tree viewer for microbiome data analysis

  Language:JavaScript451633331

• soedinglab/spacedust

  Discovery of conserved gene clusters in multiple genomes

  Language:C42731

• metaGmetapop/metapop

  A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations

  Language:R3813410

• matthiaskoenig/sbmlutils

  Python utilities for SBML

  Language:HTML36633912

• Pex2892/PETAL

  PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis

  Language:Python35326

• SBRG/cobrame

  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

  Language:Python33123317

• ibs-pan/foodwebviz

  Python package for the visualization of food webs (trophic networks)

  Language:Python9343

• gem-pasteur/Macsyfinder_models

  Repository containing up-to-date definitions and models for the detection of macromolecular systems with MacSyFinder.

  Language:Jupyter Notebook8654

• lindenb/newicktools

  Misc tools for newick format

  Language:Yacc8301

• SBRG/ecolime

  Data and tools necessary to construct iJL1678b-ME, a genome-scale model of E. coli K-12 MG1655 metabolism and expression

  Language:Python491812

• valflanza/ResCap

  Rescap Software and raw DataTables

  Language:R41

• housw/Bioinfo-Dockerfiles

  Source dockerfiles for common bioinformatic tools.

  Language:Dockerfile2301

• SBRG/oxidizeme

  OxidizeME model and notebooks

  Language:Python2503

• clreda/expansion-network

  Language:Python1101